9NL3
Structure of r2 retrotransposon protein from taeniopygia guttata initiating target-primed reverse transcription
PDB DOI: 10.2210/pdb9nl3/pdb
Classification: RNA BINDING PROTEIN/RNA/DNA Organism(s): Taeniopygia Guttata , Synthetic Construct
Deposited: 2025-03-02 Deposition Author(s): Collins, K. , Nogales, E. , Thawani, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
Structure of r2 retrotransposon protein from taeniopygia guttata initiating target-primed reverse transcription
Collins, K. , Nogales, E. , Thawani, A.
Primary Citation of Related Structures: 9NL3
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| R2 retrotransposon protein | A | 1169 | Taeniopygia Guttata , Synthetic Construct | MVTVPDKNPPCPCCGTRVNSVLNLIEHLKVSHGKRGVCFRCAKCGKENSNYHSVVCHFPKCRGPETEKAPAGEWICEVCNRDFTTKIGLGQHKRLAHPAVRNQERIVASQPKETSNRGAHKRCWTKEEEELLIRLEAQFEGNKNINKLIAEHITTKTAKQISDKRRLLSRKPAEEPREEPGTCHHTRRAAASLRTEPEMSHHAQAEDRDNGPGRRPLPGRAAAGGRTMDEIRRHPDKGNGQQRPTKQKSEEQLQAYYKKTLEERLSAGALNTFPRAFKQVMEGRDIKLVINQTAQDCFGCLESISQIRTATRDKKDTVTREKHPKKPFQKWMKDRAIKKGNYLRFQRLFYLDRGKLAKIILDDIECLSCDIPLSEIYSVFKTRWETTGSFKSLGDFKTYGKADNTAFRELITAKEIEKNVQEMSKGSAPGPDGITLGDVVKMDPEFSRTMEIFNLWLTTGKIPDMVRGCRTVLIPKSSKPDRLKDINNWRPITIGSILLRLFSRIVTARLSKACPLNPRQRGFIRAAGCSENLKLLQTIIWSAKREHRPLGVVFVDIAKAFDTVSHQHIIHALQQREVDPHIVGLVSNMYENISTYITTKRNTHTDKIQIRVGVKQGDPMSPLLFNLAMDPLLCKLEESGKGYHRGQSSITAMAFADDLVLLSDSWENMNTNISILETFCNLTGLKTQGQKCHGFYIKPTKDSYTINDCAAWTINGTPLNMIDPGESEKYLGLQFDPWIGIARSGLSTKLDFWLQRIDQAPLKPLQKTDILKTYTIPRLIYIADHSEVKTALLETLDQKIRTAVKEWLHLPPCTCDAILYSSTRDGGLGITKLAGLIPSVQARRLHRIAQSSDDTMKCFMEKEKMEQLHKKLWIQAGGDRENIPSIWEAPPSSEPPNNVSTNSEWEAPTQKDKFPKPCNWRKNEFKKWTKLASQGRGIVNFERDKISNHWIQYYRRIPHRKLLTALQLRANVYPTREFLARGRQDQYIKACRHCDADIESCAHIIGNCPVTQDARIKRHNYICELLLEEAKKKDWVVFKEPHIRDSNKELYKPDLIFVKDARALVVDVTVRYEAAKSSLEEAAAEKVRKYKHLETEVRHLTNAKDVTFVGFPLGARGKWHQDNFKLLTELGLSKSRQVKMAETFSTVALFSSVDIVHMFASRARKSMVM |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Bottom strand for target rDNA | b | 70 | NA | TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCACAG |
| Primer | p | 13 | NA | GGCATTTGGCTAT |
| 3'UTR RNA | r | 297 | NA | UAGGGUAGAUAAUCUUUGUAUAGUGGGGGGGGAUCUCAUGUACCGGGUUUCUUUUAUUUGAUUUUCAAUAAAACAGACGGUAGCUAGGUUCGCAAGGCAGCCACAAGCCAAAGAUAGGUAGGGUGCUCAUAGUGAGUAGGGACAGUGCCUUUUGAUUCACAACGCGUCAAUACCAUCUGACACGGAUACCCUUACCGGACUUGUCAUGAUCUCCCAGACUUGUCCAAGGUGGACGGGCCACCUUUACUUAACCCGGAAAAGGAACAUAUAUUAAUUAUAUGUGUUCGGAAAAUAGCC |
| Top strand for target rDNA | t | 70 | NA | CTGTGAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-03-02 Deposition Author(s): Collins, K. , Nogales, E. , Thawani, A.