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9NL2

Structure of r2 retrotransposon protein from platysternon megacephalum initiating target-primed reverse transcription

PDB DOI: 10.2210/pdb9nl2/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Platysternon Megacephalum , Synthetic Construct

Deposited: 2025-03-02
Deposition Author(s): Collins, K. , Nogales, E. , Thawani, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

9nl2
Literature

Structure of r2 retrotransposon protein from platysternon megacephalum initiating target-primed reverse transcription

Collins, K. , Nogales, E. , Thawani, A.

Primary Citation of Related Structures: 9NL2


Proteins
Molecule Chains Sequence Length Organism Sequence
R2 retrotransposon protein A 1121 Platysternon Megacephalum , Synthetic Construct QKTIIQLPNDNPACPFCGDHVGKPSALNVHLKRNHGGREVEFQCSMCNKADPKAHSILCHIPKCKGKVTEEPTGDWACETCNKQFNTKSGLSQHKRIAHPAIRNQERIAASQPKPNSQRGKHNSCWTVEEEQLLAAFNNMFWGKKNINILISDHIHMKTAKQISEKRRLLGLNKNATVTTTNPLPVSSTCHLKIRTDSPNTTTGLKDTYMCKINENIVNQGQIKFDSEVISAWMAGDSNIRSLVESTSLDILSTFLMETPKPRKKGNNKITNKKSGKKKKWMEKRAVKKGFYKRYQHLFETDRCKLASIILDGTERLQCQIPLTEILETYKSKWETLTPFEGLGQFKSHAVADNTAFEILLSAKEIMKNIKEMNKNSAPGPDKVSLRDLLLADPECNALEKLFNTWLITGIIPNSIKECRSLLIPKTADPEALKELGNWRPLTIGSIVLRLFSRIITNRLAKACPINARQRGFIATPGCSENLKILHTIVKQAKTSKKSLGVVFVDIAKAFDSVSHDHIMWVLQERGLDQHIVNIIEDSYKKIHTRMEVGTERTPPIEIKVGVKQGDPMSPLLFNLAIDPLITALEKANTGFSYGKNKITSLAFADDLVMLSDTWEGMNKNIQILETFCNLSGLKVQAKKCYGFFLSPTHDSYTINKCDAWKIDKDSLNMIQPGESEKYLGLKVDPWIGFSKPVLAEKLTIWLKRLTEAPLKPSQKLTMLNIYTIPRIIYLADHTDTKKTLLSSLDDNIRTVVKGWLHLPPDTCNGFIYTKTRDGGLGVTRLASLIPSIQARRLHRIATSEDETIRNIAMANNIEEEFQNLWVTAGGKKEEIPRITDPVSIDYRLPRRILELLNEWEKPAPKKMYPIPCNWREAEMAHWKNLPCQGSGIEHFDNDTISNDWLQFHRGFSERQFLMGLKIRANVYPTREYQGRGRTNKNVNCRNCTASYESLSHILGQCPAVQGARIRRHNKLCSMLKREAKELKWVVYEEPHLHTTEKELRKPDLIFVKEEMALVVDVTVRFEYKEKVFEDAAAEKVRHYKDLTSQIKELTGAKEIEYFGFPLGARGKWPEINEKVLTALGMPDYQQKRTAKRFSKRTLLYSIDVINTFENIGKNNKNNVP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Bottom strand for target rDNA b 70 NA TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCACAG
Primer p 13 NA GGCATTTGGCTAT
3'UTR RNA r 297 NA UAGGGUAGAUAAUCUUUGUAUAGUGGGGGGGGAUCUCAUGUACCGGGUUUCUUUUAUUUGAUUUUCAAUAAAACAGACGGUAGCUAGGUUCGCAAGGCAGCCACAAGCCAAAGAUAGGUAGGGUGCUCAUAGUGAGUAGGGACAGUGCCUUUUGAUUCACAACGCGUCAAUACCAUCUGACACGGAUACCCUUACCGGACUUGUCAUGAUCUCCCAGACUUGUCCAAGGUGGACGGGCCACCUUUACUUAACCCGGAAAAGGAACAUAUAUUAAUUAUAUGUGUUCGGAAAAUAGCC
Top strand for target rDNA t 70 NA CTGTGAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-03-02
Deposition Author(s): Collins, K. , Nogales, E. , Thawani, A.