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9MB7

Cryo-em structure of esacas9-nng-guide rna-mismatched target dna complex

PDB DOI: 10.2210/pdb9mb7/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Staphylococcus Aureus

Deposited: 2025-03-15
Deposition Author(s): Nakagawa, R. , Nishimasu, H. , Nureki, O. , Omura, S.N. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.88 Å

9mb7
Literature

Cryo-em structure of esacas9-nng-guide rna-mismatched target dna complex

Nakagawa, R. , Nishimasu, H. , Nureki, O. , Omura, S.N. , Yamashita, K.

Primary Citation of Related Structures: 9MB7


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
target DNA strand c 43 NA ATTTGAATAGGCAAGCCAAGCGCACCTAATTTCCGGTATTTAG
non-target DNA strand d 43 NA CTAAATACGGGAAATTAGGTGCGCTTGGCTTGCCTATTCAAAT
sgRNA b 99 NA GGGAAAUUAGGUGCGCUUGGCGUUUUAGUACUCUGGAAACAGAAUCUACUAAAACAAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAUA

Proteins
Molecule Chains Sequence Length Organism Sequence
Ubiquitin-like protein SMT3,CRISPR-associated endonuclease Cas9 A 1170 Staphylococcus Aureus MGHHHHHHGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLYFQGSHMKRNYILGLDIGITSVGYGIIDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRIQRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDTGNELSTKEQISRNSKALEEKYVAELQLERLKKDGEVRGSINRFKTSDYVKEAKQLLKVQKAYHQLDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLYNALNDLNNLVITRDENEKLEYYEKFQIIENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGKPEFTNLKVYHDIKDITARKEIIENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQISNLKGYTGTHNLSLKAINLILDELWHTNDAQIAIFNALKLVPKKVDLSQQKEIPTTLVDDFILSPVVKRSFIQSIKVINAIIKKYGLPNDIIIELAREKNSKDAQKMINEMQKRNRQTNERIEEIIRTTGKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHIIPRSVSFDNSFNNKVLVKQEENSKKGNRTPFQYLSSSDSKISYETFKKHILNLAKGKGRISKTKKEYLLEERDINRFSVQKDFINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKSINGGFTSFLRRKWKFKKERNKGYKHHAEDALIIANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKDYKYSHRVDKKPNRKLINDTLYSTRKDDKGNTRIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHHDPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDDYPNSRNKVVKLSLKPYRFDVYLDNGVYKFVKVNNLDVIKKENYYEVNSKCYEEAKKLKKISNQAEFIASFYRNDLIKINGELYRVIGVASDLLNAIEVNMIDITYREYLENMNDKRPPRIFKTISSKTQSIKKYSTDILGNLYEVKSKKHPQIIKKG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-03-15
Deposition Author(s): Nakagawa, R. , Nishimasu, H. , Nureki, O. , Omura, S.N. , Yamashita, K.