9MB6
Cryo-em structure of wild-type sacas9-guide rna-mismatched target dna complex
PDB DOI: 10.2210/pdb9mb6/pdb
Classification: DNA BINDING PROTEIN Organism(s): Staphylococcus Aureus
Deposited: 2025-03-15 Deposition Author(s): Nakagawa, R. , Nishimasu, H. , Nureki, O. , Omura, S.N. , Yamashita, K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.01 Å
Cryo-em structure of wild-type sacas9-guide rna-mismatched target dna complex
Nakagawa, R. , Nishimasu, H. , Nureki, O. , Omura, S.N. , Yamashita, K.
Primary Citation of Related Structures: 9MB6
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| target DNA strand | c | 43 | NA | ATTTGAATATTCAAGCCAAGCGCACCTAATTTCCGGTATTTAG |
| sgRNA | b | 99 | NA | GGGAAAUUAGGUGCGCUUGGCGUUUUAGUACUCUGGAAACAGAAUCUACUAAAACAAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAUA |
| non-target DNA strand | d | 43 | NA | CTAAATACGGGAAATTAGGTGCGCTTGGCTTGAATATTCAAAT |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ubiquitin-like protein SMT3,CRISPR-associated endonuclease Cas9 | A | 1170 | Staphylococcus Aureus | MGHHHHHHGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLYFQGSHMKRNYILGLDIGITSVGYGIIDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRIQRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDTGNELSTKEQISRNSKALEEKYVAELQLERLKKDGEVRGSINRFKTSDYVKEAKQLLKVQKAYHQLDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLYNALNDLNNLVITRDENEKLEYYEKFQIIENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGKPEFTNLKVYHDIKDITARKEIIENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQISNLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQKEIPTTLVDDFILSPVVKRSFIQSIKVINAIIKKYGLPNDIIIELAREKNSKDAQKMINEMQKRNRQTNERIEEIIRTTGKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHIIPRSVSFDNSFNNKVLVKQEENSKKGNRTPFQYLSSSDSKISYETFKKHILNLAKGKGRISKTKKEYLLEERDINRFSVQKDFINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKSINGGFTSFLRRKWKFKKERNKGYKHHAEDALIIANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKDYKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHHDPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDDYPNSRNKVVKLSLKPYRFDVYLDNGVYKFVTVKNLDVIKKENYYEVNSKCYEEAKKLKKISNQAEFIASFYNNDLIKINGELYRVIGVNNDLLNRIEVNMIDITYREYLENMNDKRPPRIIKTIASKTQSIKKYSTDILGNLYEVKSKKHPQIIKKG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-03-15 Deposition Author(s): Nakagawa, R. , Nishimasu, H. , Nureki, O. , Omura, S.N. , Yamashita, K.