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9MA7

Cryo-em structure of ebv gp350 d123 in complex with neutralizing antibody 1a12 and 1h5 and non-neutralizing antibody 2e9

PDB DOI: 10.2210/pdb9ma7/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Gammaherpesvirus 4

Deposited: 2025-03-14
Deposition Author(s): Ma, H.Y. , Sun, C.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.14 Å

Literature

Cryo-em structure of ebv gp350 d123 in complex with neutralizing antibody 1a12 and 1h5 and non-neutralizing antibody 2e9

Ma, H.Y. , Sun, C.

Primary Citation of Related Structures: 9MA7


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein GP350 A 478 Homo Sapiens , Human Gammaherpesvirus 4 MEAALLVCQYTIQSLIHLTGEDPGFFNVEIPEFPFYPTCNVCTADVNVTINFDVGGKKHQLDLDFGQLTPHTKAVYQPRGAFGGSENATNLFLLELLGAGELALTMRSKKLPINVTTGEEQQVSLESVDVYFQDVFGTMWCHHAEMQNPVYLIPETVPYIKWDNCNSTNITAVVRAQGLDVTLPLSLPTSAQDSNFSVKTQMLGNEIDIECIMEDGEISQVLPGDNKFNITCSGYESHVPSGGILTSTSPVATPIPGTGYAYSLRLTPRPVSRFLGNNSILYVFYSGNGPKASGGDYCIQSNIVFSDEIPASQDMPTNTTDITYVGDNATYSVPMVTSEDANSPNVTVTAFWAWPNNTETDFKCKWTLTSGTPSGCENISGAFASNRTFDITVSGLGTAPKTLIITRTATNATTTTHKVIFSKAPESTTTSPTLNTTGFADPNTTTGLPSSTHVPTNLTAPASTGPTVSTGSHHHHHH
1H5 heavy chain no-CH2CH3 B 248 Homo Sapiens , Human Gammaherpesvirus 4 MGWSCIILFLVATATGVHSQVQLVQSGAEVRKPGSSVKVSCEFSGGPFKNSAFSWVRQAPGQGPEWMGGIIPPFVRGKYAQGFQGRVTITADEHLSTTYMELTGLRSDDTAVYYCARGPSSGNYNYYYGMDVWGQGTPVSVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
1H5 light chain C 235 Homo Sapiens , Human Gammaherpesvirus 4 MGWSCIILFLVATATGSWAQSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSGWVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
1A12 heavy chain no-CH2CH3 D 248 Homo Sapiens , Human Gammaherpesvirus 4 MGWSCIILFLVATATGVHSQVQLVQSGAEVKKPGASMKVSCKASGYTFAGYYIHWVRQAPGQGLEWMGSINPNSGKATYAQRFHGRVTLTREMSINTAYMELTRLTSDDTAIYYCARDATYSTSFSPRWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
1A12 light chain E 233 Homo Sapiens , Human Gammaherpesvirus 4 MGWSCIILFLVATATGSWAEIVLTQSPGTLSLSPGERATLSCRASQSISSNSLAWYQQRPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPRTFGPGTKVDIKGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
2E9 heavy chain no-CH2CH3 F 245 Homo Sapiens , Human Gammaherpesvirus 4 MGWSCIILFLVATATGVHSQVQLQESGPGLVKPSETLSLICTVSGYSISSGYNWGWIRQPPGKGLEWIGSINHSGSTYYNPSLKSRVTTSVDTSTNQFSLKLSSVTAADTAVYYCARDSIMIGYRGLDYWGQGTLVSVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
2E9 light chain G 235 Homo Sapiens , Human Gammaherpesvirus 4 MGWSCIILFLVATATGSWAQSVVTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAYVFGTGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-03-14
Deposition Author(s): Ma, H.Y. , Sun, C.