PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9LYI

Cryo-em structure of collagenase h (e416q mutant) from hathewaya histolytica in complex with collagen model peptide (pro-hyp-gly)12

PDB DOI: 10.2210/pdb9lyi/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Hathewaya Histolytica , Synthetic Construct

Deposited: 2025-02-20
Deposition Author(s): Kawahara, K. , Oki, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Literature

Cryo-em structure of collagenase h (e416q mutant) from hathewaya histolytica in complex with collagen model peptide (pro-hyp-gly)12

Kawahara, K. , Oki, H.

Primary Citation of Related Structures: 9LYI


Proteins
Molecule Chains Sequence Length Organism Sequence
Collagenase ColH A 983 Hathewaya Histolytica , Synthetic Construct GSVQNESKRYTVSYLKTLNYYDLVDLLVKTEIENLPDLFQYSSDAKEFYGNKTRMSFIMDEIGRRAPQYTEIDHKGIPTLVEVVRAGFYLGFHNKELNEINKRSFKERVIPSILAIQKNPNFKLGTEVQDKIVSATGLLAGNETAPPEVVNNFTPILQDCIKNIDRYALDDLKSKALFNVLAAPTYDITEYLRATKEKPENTPWYGKIDGFINELKKLALYGKINDNNSWIIDNGIYHIAPLGKLHSNNKIGIETLTEVMKVYPYLSMQHLQSADQIKRHYDSKDAEGNKIPLDKFKKEGKEKYCPKTYTFDDGKVIIKAGARVEEEKVKRLYWASKEVNSQFFRVYGIDKPLEEGNPDDILTMVIYNSPEEYKLNSVLYGYDTNNGGMYIEPEGTFFTYEREAQESTYTLEELFRHQYTHYLQGRYAVPGQWGRTKLYDNDRLTWYEEGGAELFAGSTRTSGILPRKSIVSNIHNTTRNNRYKLSDTVHSKYGASFEFYNYACMFMDYMYNKDMGILNKLNDLAKNNDVDGYDNYIRDLSSNYALNDKYQDHMQERIDNYENLTVPFVADDYLVRHAYKNPNEIYSEISEVAKLKDAKSEVKKSQYFSTFTLRGSYTGGASKGKLEDQKAMNKFIDDSLKKLDTYSWSGYKTLTAYFTNYKVDSSNRVTYDVVFHGYLPNEGDSKNSLPYGKINGTYKGTEKEKIKFSSEGSFDPDGKIVSYEWDFGDGNKSNEENPEHSYDKVGTYTVKLKVTDDKGESSVSTTTAEIKDLSENKLPVIYMHVPKSGALNQKVVFYGKGTYDPDGSIAGYQWDFGDGSDFSSEQNPSHVYTKKGEYTVTLRVMDSSGQMSEKTMKIKITDPVYPIGTEKEPNNSKETASGPIVPGIPVSGTIENTSDQDYFYFDVITPGEVKIDINKLGYGGATWVVYDENNNAVSYATDDGQNLSGKFKADKPGRYYIHLYMFNGSYMPYRINIEGSVGR
(Pro-Hyp-Gly)12 B 36 Hathewaya Histolytica , Synthetic Construct PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPG
(Pro-Hyp-Gly)12 C 36 Hathewaya Histolytica , Synthetic Construct PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPG
(Pro-Hyp-Gly)12 D 36 Hathewaya Histolytica , Synthetic Construct PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-02-20
Deposition Author(s): Kawahara, K. , Oki, H.