Cryoem structure of h7 hemagglutinin in complex with a human neutralizing antibody 6y13
PDB DOI: 10.2210/pdb9lho/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1))
Deposited: 2025-01-13 Deposition Author(s): Gao, G.F. , Peng, Q. , Shi, Y. , Wang, M. , Yuan, B.
Method: ELECTRON MICROSCOPY Resolution: 3.1 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Hemagglutinin | A | 505 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNVPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRRDPALIVWGIHHSGSTTEQTKLYGSGSKLITVGSSNYQQSFVPSPGARPQVNGQSGRIDFHWLILNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNINSRAVGKCPRYVKQESLMLATGMKNVPELPKGRGLFGAIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFTEVEKQIGNVINWTRDSMTEVWSYNAELLVAMENQHTIDLADSEMNKLYERVRRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRIQIDPVKEFRLVPR |
| Hemagglutinin | B | 505 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNVPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRRDPALIVWGIHHSGSTTEQTKLYGSGSKLITVGSSNYQQSFVPSPGARPQVNGQSGRIDFHWLILNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNINSRAVGKCPRYVKQESLMLATGMKNVPELPKGRGLFGAIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFTEVEKQIGNVINWTRDSMTEVWSYNAELLVAMENQHTIDLADSEMNKLYERVRRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRIQIDPVKEFRLVPR |
| Hemagglutinin | C | 505 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNVPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRRDPALIVWGIHHSGSTTEQTKLYGSGSKLITVGSSNYQQSFVPSPGARPQVNGQSGRIDFHWLILNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNINSRAVGKCPRYVKQESLMLATGMKNVPELPKGRGLFGAIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFTEVEKQIGNVINWTRDSMTEVWSYNAELLVAMENQHTIDLADSEMNKLYERVRRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRIQIDPVKEFRLVPR |
| Hemagglutinin | D | 505 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNVPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRRDPALIVWGIHHSGSTTEQTKLYGSGSKLITVGSSNYQQSFVPSPGARPQVNGQSGRIDFHWLILNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNINSRAVGKCPRYVKQESLMLATGMKNVPELPKGRGLFGAIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFTEVEKQIGNVINWTRDSMTEVWSYNAELLVAMENQHTIDLADSEMNKLYERVRRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRIQIDPVKEFRLVPR |
| Hemagglutinin | E | 505 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNVPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRRDPALIVWGIHHSGSTTEQTKLYGSGSKLITVGSSNYQQSFVPSPGARPQVNGQSGRIDFHWLILNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNINSRAVGKCPRYVKQESLMLATGMKNVPELPKGRGLFGAIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFTEVEKQIGNVINWTRDSMTEVWSYNAELLVAMENQHTIDLADSEMNKLYERVRRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRIQIDPVKEFRLVPR |
| Hemagglutinin | F | 505 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNVPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRRDPALIVWGIHHSGSTTEQTKLYGSGSKLITVGSSNYQQSFVPSPGARPQVNGQSGRIDFHWLILNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNINSRAVGKCPRYVKQESLMLATGMKNVPELPKGRGLFGAIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFTEVEKQIGNVINWTRDSMTEVWSYNAELLVAMENQHTIDLADSEMNKLYERVRRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRIQIDPVKEFRLVPR |
| scFv of 6Y13 chimera | H | 264 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DIVMTQSPDSLAVSLGERATINCKSSQSVLSGSINMNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTVSSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIKGGGGSGGGGSGGGGSQVQLVESGGGVVQPGRSLRLSCAASGFSFSNYGLHWVRQAPGKGLDWVAVISYDGTNKYYADSVKGRFTISRDNSKNTLHLQMNSLRAEDTAVYYCAKGRGPYCSSSICYHGMDVWGQGTTVTVSSHHHHHHHHHH |
| scFv of 6Y13 chimera | N | 264 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DIVMTQSPDSLAVSLGERATINCKSSQSVLSGSINMNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTVSSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIKGGGGSGGGGSGGGGSQVQLVESGGGVVQPGRSLRLSCAASGFSFSNYGLHWVRQAPGKGLDWVAVISYDGTNKYYADSVKGRFTISRDNSKNTLHLQMNSLRAEDTAVYYCAKGRGPYCSSSICYHGMDVWGQGTTVTVSSHHHHHHHHHH |
| scFv of 6Y13 chimera | S | 264 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DIVMTQSPDSLAVSLGERATINCKSSQSVLSGSINMNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTVSSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIKGGGGSGGGGSGGGGSQVQLVESGGGVVQPGRSLRLSCAASGFSFSNYGLHWVRQAPGKGLDWVAVISYDGTNKYYADSVKGRFTISRDNSKNTLHLQMNSLRAEDTAVYYCAKGRGPYCSSSICYHGMDVWGQGTTVTVSSHHHHHHHHHH |
| scFv of 6Y13 chimera | I | 264 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DIVMTQSPDSLAVSLGERATINCKSSQSVLSGSINMNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTVSSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIKGGGGSGGGGSGGGGSQVQLVESGGGVVQPGRSLRLSCAASGFSFSNYGLHWVRQAPGKGLDWVAVISYDGTNKYYADSVKGRFTISRDNSKNTLHLQMNSLRAEDTAVYYCAKGRGPYCSSSICYHGMDVWGQGTTVTVSSHHHHHHHHHH |
| scFv of 6Y13 chimera | O | 264 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DIVMTQSPDSLAVSLGERATINCKSSQSVLSGSINMNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTVSSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIKGGGGSGGGGSGGGGSQVQLVESGGGVVQPGRSLRLSCAASGFSFSNYGLHWVRQAPGKGLDWVAVISYDGTNKYYADSVKGRFTISRDNSKNTLHLQMNSLRAEDTAVYYCAKGRGPYCSSSICYHGMDVWGQGTTVTVSSHHHHHHHHHH |
| scFv of 6Y13 chimera | T | 264 | Homo Sapiens , Influenza A Virus (A/Duck/Chiba/25-51-14/2013(H7N1)) | DIVMTQSPDSLAVSLGERATINCKSSQSVLSGSINMNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTVSSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIKGGGGSGGGGSGGGGSQVQLVESGGGVVQPGRSLRLSCAASGFSFSNYGLHWVRQAPGKGLDWVAVISYDGTNKYYADSVKGRFTISRDNSKNTLHLQMNSLRAEDTAVYYCAKGRGPYCSSSICYHGMDVWGQGTTVTVSSHHHHHHHHHH |
Method: ELECTRON MICROSCOPY