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FASTA Sequence PDB Format mmCIF Format
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9L9V

State a of archaeal pre-50s ribosome

PDB DOI: 10.2210/pdb9l9v/pdb

Classification: RIBOSOME
Organism(s): Haloferax Mediterranei Atcc 33500

Deposited: 2024-12-31
Deposition Author(s): Li, Z.Q. , Yang, X.Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.77 Å

9l9v
Literature

State a of archaeal pre-50s ribosome

Li, Z.Q. , Yang, X.Y.

Primary Citation of Related Structures: 9L9V


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
23S RNA 0 2916 NA UAUAUCAACUGGCUACUGUGCCAGCUGGUGGAUAGCUCGGCUCGAGAGCCGAUGACGGACGUGCCAAGCUGCGAUAAGCCUCAGGGACCCGCAUGGAGGGAAAGAACUGAGGAUCUCCGAAUGGGAAUCCCCACAGCAAUUGCCUAGCGCAAUGGGGAACGUUCCGAAUUGAAACAUCUUAGUAGGAACAGGAAAAGAAAGCAAUCCGCGAUGUCGUUAGUAACGGCGAGUGAACGCGAUACAGUCCAAACCGAAGCCUUCGGGCAAUGUGGUGUACGGACUACCCAUAACGGACCUGGAAUUCACACGAAGUCUCCUGGAACGGAGCGUGAUACAGGGUGAAAACCCCGUAGUGUGAAGGAAAGAUCCCGGGGUUGUUCCAGAAUAGCGGGGGUUGGAUAUCCCUCGUGAAUUACGCAGGCAUCAACUGCGAAGACUAAACACUCCUCGAGACCGAUAGCGAACAAGUAGCGUGAGCGAACGCUGAAAAGCACCCCGAAAAGGGCGGUGCAAUAGGGCUUGAAAUCAGUUGGCGAUAGAGCGAUAUAGCAUACAAGGUCGUCUGACGAAUGACCUAGAAGCGAUUCUACAGUAAGACUCAGACGAAGCCGAUGUUAUAUCGUACGUUUUGAAAAACGAACCAUGGAGUGCAUCUGACUGGCGAGUCUAAGGGGAGAACCCCCGGAGGCAUAGGGAAACCGAUACGGCCGCAGUCUUUGACCAGGGCCACCGUCUUCAAGGGCGGGGAGCCAACCGGAUGCGACCCGAAACCAAGUGAUCUACGCCGGAGCAGGGCGAAGCGUGGCGAAAGCUGCGUGGAGGCCCGUUAGAGUUGGUGUCCUACAAUACCCUCUCGUGACUCUGGUGUAGGGGUGAAAGGCCCAUCGAACUUGGCAACAGCUGGUUCCAACCGAAACAUGUCGAAGCAUGACCUCUGAUGAGAUAGUCCGUGAGGUAGAGCGACCGAUUGGGAAUCCGGCCUCCGAGAGGAGUUCGCUUCCCUGUCAAACUCCAAACUUACGGACAUCGUAGACUCAGGGAGUCCGGUGUGCGGGGUAAGCUUGUGCACCGUGAGGGAGACAACCCAGAGCCAGGUUAAGGACCCAAAGUGUGGAUUAAGUGUGAUCGAAGAUUGUCUCGAGCCCUAAACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAAGAAUAGCGUAACAGCUUACCGGCCGAGGUUCGAGGCGUCGAAAAUGAUCGGGACUCAAAUCCACCUCCGAGACCUGGCGGCGUGCUAUUUAGCACGAUUCCGUAGGUUGGCAUACUGCAUGGACGGAAGUACGGGUGAGAACUCGUAUGGACCGUGCAGCAACGAAAAUCAUGGUCUCAGUAGCAGCGAGAGUCGGGUGUGAACCCCGACGACCUUACGCGCAAGGGUUCCUCGGCACUGUCAAUCAGCCGAGGGUUAGUCGAUCCUAAGUCUAUCCGUAAUUCGAAAUAGAUGAAAGGGAAACUGGUUAAUAUUCCAGUACCUUCUUGCAAUAAAAGUCGACGCUUUAGGAAACACCGAGCGGGGCCUUCGCCCCGUCGAAUCACCGAACUUCGUGGAAGCCGUAAUGGCACGAAGCGAAAGAAUGGUGAGAUAGGGAAACUCGGCGGUACCUAGAGCCCGUGAAAAGACAAGCAAGAAGCUCGUACCGAGAUCCGACACAGGUGCGCUGGCAGAGUAAGCCAAGGUCUGUCGGGAUCAACCGACGUUAGGGAAUUCGGCAAGUUAGUCCCGUAAGUUCGCGAUAAGGGAUACCUGCUCUUGAUAGAGCAGGUCGCAGUGACUCGGACGCUCCGACUGUCUAGUAACAACAUAGGUGACCGCAAAUCCGCAAGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCGGGUAUCUGAACACCCAUUACAAUGGGACGAAGGACCCGUCAACGGCGGGGGUAACUAUGACCCUCUUAAGGUAGCGUAGUACCUUGCCGCUUCAGUAGCGGCUUGCAUGAAUGGAUCAACGAGAGCGUCACUGUCCCAACGUUGGGCCCGGUGAACAGUACGUUCCAGUGCGGAGUCUGGAGACCCCCAAGGGGAAGCGAAGACCCUAUAGAGCUUUACUGCAGGCUGUCGCUGAGACGUGGUCGCUAAUGUGCAGCAUAGGUAGGAGCCGUUACACAGGUACCCGCGCCAGCGGGCCACCGAGGCAGCAUUGAAAUACUACCCGUUAGUGACUGCGACUCUCACUCCUGGCGGAGGACACCGGUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCAAAGAUUUCCUCACGCGAGUCGGGAACUCGUGGAAGAGCGCAAGAGCAAACGGAAGUCUGACAGUGACAUUCCCAACGAGUGUCGCUGACGCGAAAGCGUGGUCUAGCGAACCUACGAGGUUCAUUCAUGGGACCCGUAGAUGACAGAAAAGCUACCUUAGGGAUAACAGAGUCGUCACCCGCAAGAGCACAUAUCGACCGGGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCUGUGCAGAAGCAGGCAAGGGUGAGGUUGUUCGCCUAUUAAAGGAGGUCGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUCGGCUGCUAUCUAUUGGGGGUGCUAAGGAACUUGACGUGAACGUUCGUAUAGUACGAGAGGAACUACGAAUGGGUGCCACUGGUGUACCGGUUGUCCGAGAGGGCAGUUGCCGGGCAGCUACGCACCGCAGGGUAAGAGCUGAAAGCAUCUAAGCUCGAAACCUACACGGAAAAGAAGUUCCACUGAGGUCACUCGUAGAAGACGAGUUCGAUAGACUCGGGGUGUACGUGUCGAGGCAACGAGACAUUAAGCCCGCGAGCACUAACAGACCAAGCCACAUUC
5S RNA 9 122 NA UACGGCGGCCAGAGCGGUGAGGUUCCACCCGUACCCAUCCCGAACACGGAAGUUAAGCUCGCCUGCGUUCUGGUCAGUACUGGAGUGAGCGAUCCUCUGGGAAAUCCAGUUCGCCGCCCCUA

Proteins
Molecule Chains Sequence Length Organism Sequence
Large ribosomal subunit protein eL21 K 96 Haloferax Mediterranei Atcc 33500 MPSSNGPMKGTRGKLSNKPRERGTSPPQRAIAEFEEGQKVHLNLDPSVRDGRFHPRFNGLTGEVVGKQGRAFKVQINDGGKEKMVIARPAHLRAQQ
Large ribosomal subunit protein uL22 L 153 Haloferax Mediterranei Atcc 33500 MGINYSVEADPDTTAKGMLRDRPISLKHSKAISRAIKGMPVADAEEYLEAVIDGERSVPFKQHNSGVGHRSDIEGWDAGRYPEKASKAFLELLENVRNNATEQGFDGPAMEIKHIAAHKVGERPGRKPRAFGRADPWNTPICDVELIIEEVEE
Large ribosomal subunit protein eL24 M 67 Haloferax Mediterranei Atcc 33500 MVEKRTCDYSGEEIEPGTGTMYVKTDGTILHFKNSKAEKNYFLGREARDLEWTEAGRRASGRAEEDN
Large ribosomal subunit protein uL24 N 118 Haloferax Mediterranei Atcc 33500 MTRQPRKQRTQTRDAPLHERQKQVRAPLSADLREEYGSRNVRVNAGDTVEVLRGDFAGEEGEVTEVDLTDAVIFVEDVTVAKADGEEVPRPLQASNVRVTELDLEDDVREARLKEDNE
Large ribosomal subunit protein uL30 O 154 Haloferax Mediterranei Atcc 33500 MQAIVQLRGEVNISQDVRDTLSMLNIHRVNHATFVPENDAYRGMITKVNDFVAHGTPSVDVVETLVRTRAEPESGDGDISDEWVSENTDYDDVAALAQALVDEETTLREQGVSPVLRLHPPRGGHRGQKHVTKEGGQLGKHDTEQIDELLEAMR
Large ribosomal subunit protein eL31 P 92 Haloferax Mediterranei Atcc 33500 MSANDFEERVVTVPLRDVKAVPSHERAGRSMKIIREHLAKHFKVDAENVRLDPQINEDIWEHGRQSPPSKFRVRAARFDEDGESIVEAEPAE
Large ribosomal subunit protein eL32 Q 234 Haloferax Mediterranei Atcc 33500 MSEEITELEDISGVGPSKADALREAGFESVDDVQAASQSELAEVDGIGNALAARIKADVGGLEVSEEAEAEVEDESEAEVEEPAEDVETELRPRGHADKKPQLDDETAEALAQKRREGKPQFNRQDYHKKKRTPTSWRRPRGGLSKQRRGVKGKGPKVEAGYRTPKAARDLHPSGFEEVRVFNTDDLEGVDGDTQAVRIASSVGARKRERIEEVCEDREIRVLNPTYVEVEVDN
Large ribosomal subunit protein eL43 R 89 Haloferax Mediterranei Atcc 33500 MAEKKARSVGSAGRFGARYGRVARRRVKEIEAEMRNAKVDGDNVTRVETGIWKNEETGEIFTGGTYRPETPAGKQVSRSIRAALTGENE
Large ribosomal subunit protein eL37 S 58 Haloferax Mediterranei Atcc 33500 MTGAGTPSQGKKNKTTHVKCRRCGEKSYHVKKKVCSSCGFGKSKKRRSYAWQSKSGDN
Large ribosomal subunit protein eL42 T 93 Haloferax Mediterranei Atcc 33500 MQMPRRFNTYCPNCKGHHEHEVEKVRSGRPTGMKWDARAQKRGKSTIGNAGRFSKVPGGDKPTKKTHLKYICSDCGKAHMREGWRAGRLEFQE
Large ribosomal subunit protein uL2 U 241 Haloferax Mediterranei Atcc 33500 MGRRIQGQRRGRGSSTFRAPSHRYKAELSHKKSEEKDTITGTVVGIEHDPARSAPIALVEFEDEQRMILAPEGISVGEELQIGVSAEIKPGNTLPLAEIPEGVPVCNVEHQPGDGGKFARASGVSAQLLSHDREVAIVKLPSGEVKRLNPNCRATIGVVAGGGRTEKPFVKAGKKYHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVGDIASKRTGRGGKGGN
Large ribosomal subunit protein uL3 V 338 Haloferax Mediterranei Atcc 33500 MPQPSRPRKGSMGFSPRKRAVKEVPRIKSWPDDDGSPALQGFAGYKAGMTHVMMVNDEADSPREGMEESVPVTVVETPPMRAVALRAYEQTPYGMKPKTEVWASEFHDELDRVLDLPAEDTFESDADALREAVEAGEVDDLRVITHTVPAELKNVPKKKPDVMETRVGGGSMVERADFALDLVEEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELNKRLIDLGEGDDASVEGGFVNYGEVDGSYALIKGSLPGPNKRLLRFRPAIRPNDQPRLDPEVRFVSTASNQG
Large ribosomal subunit protein uL4 W 248 Haloferax Mediterranei Atcc 33500 MQATIRDLNGDDAGSIDLPEVFETAYRPDLIKRAVIAAQANRKQPYGADPYAGLRTPAESMGSGRGMSHDPRQNGVARRVPHAVSGRRAHPPKAEKDQGKEINTKERKLAVRSALAATTDSELVAERGHRFDDDLELPLVVSDDFEDLVKTKEVVDLLQTLGVYDDIERSEDNKKVKGGQGKLRGRKYTRPKSILFVTAEEPSKAARNLAGVDVATAANVSAEDLAPGTHAGRLTLFTESAIEEVAER
Large ribosomal subunit protein uL5 X 172 Haloferax Mediterranei Atcc 33500 MSEAEFHEMRDPRIEKVVVHMGVGEGGRELAKSEDILEEITGQESVRTISGRASQDFGVRQGEPVGAKVTLRGESAVEFLETALPITDLSASSFDETGNFGFGVEEHTEFPSQEYDPQIGIYGLDVTVNIVRPGYRVKKRDKRSRQIPSSHRMTVEDAVAFIESTFDVEVEE
Large ribosomal subunit protein uL6 Y 178 Haloferax Mediterranei Atcc 33500 MSRIEIEIPDEVSAEVSNLELTIEGPNGSVTKRLWYPNVSVSAEDGAIAIESDVENAKTNATIGTFESHVNNMLHGATEGWEYQMEVHYAHFPMQVSVEGDDVVIKNFLGEKSPRRAAIRGDTDVQVDGEEVTLTGPDKEDVGQTAADIEQLTRVKDKDTRVFTDGVYITQKPKTGDA
Translation initiation factor 6 B 221 Haloferax Mediterranei Atcc 33500 MLRASFAGSSYIGVFARATDDVLLVRPDADDSLAEQMAEELDVPVVQTTIGGSGTVGALATGNENGLLVSSRATTREKEALEDAVDLPVYELPGRINAAGNVVLANDYGAYVHTDLSDEAVAAVEDALDVPVERGDLADVRTVGMAAVANNRGVLCHPKSREPELEALESLLDVRADIGTINYGGPLVGSGLVSNDEGYIVGEDTTGPELGRIEDALDYID
Large ribosomal subunit protein uL16 F 176 Haloferax Mediterranei Atcc 33500 MSDKPASMYREIKNPAYTRREYITGIPGSKIAQHNMGDLQADPEDYPVEISLEVEEDVQIRHGSLESARLSANRLMLKNAGEKQYKMILRKFPHHVIRENKQATGAGADRVSDGMRQSFGKVVGTAARIPKGETVFTIYCDVEDAEIAKDAFRRAYNKMSPPCRIVVERGEELLVA
Large ribosomal subunit protein uL18 I 184 Haloferax Mediterranei Atcc 33500 MATGPRYKVPMRRRREVRTDYHQRLRLLKSGKPRLVARVSNKHVRAQLVTPGPQGDETHAAATSADLDEYGWEAPTGNLPSAYLTGYLAGIRALAAGVEEAVLDIGLNTATPGNKVFAVQEGAIDAGLEIPHNDAVLADWDRNRGVHIAEYAEQLDEPLYSGDFDATNLPEHFDEVLGNLQEDE
Large ribosomal subunit protein eL8 E 120 Haloferax Mediterranei Atcc 33500 MAVYVDFDVPADLADSAVEALEVARDTGIVKKGTNETTKSIERGNAQLVLIAEDVSPEEIVMHLPELADEKGIPFLFVETQDDIGHAAGLEVGSAAAAIVDAGEASDDVEDIATKVEDLR
Large ribosomal subunit protein eL15 G 196 Haloferax Mediterranei Atcc 33500 MARSFYSHIKEAWKTPKEGKLAELQWQRKQEWRNQGAIERIERPTRLDKARELGYKAKQGIVVVRVSVRKGGARKQRHKAGRRTKRQGVNRIGRRKSIPRIAEERASRKYPNMRVLNSYGVGQDGSQKWQEVILVDPNHPAIQNDDDLNWICNDDHDGRAFRGLTNAGKRGRGLQNRGKGTEHIRPSLSSSRRRGK
Large ribosomal subunit protein eL18 H 116 Haloferax Mediterranei Atcc 33500 MSKTNPRLKSLIAELKAVSRESGANVWQDVADRLEKPRRTHAEVNLGRIERYAQEDETVVVPGKVLGSGVLQKNVTVAAVDFSSTARTKIEQVGDVVTLEQLAEQNPDGSNVRVIR
Large ribosomal subunit protein eL19 J 151 Haloferax Mediterranei Atcc 33500 MTDLKAQKRMAADVLDVGKGRVWFDPEAQSDIAEAITREDIRELVDEGTIRAKNAKGNSKGRARERAAKRSYGHRKGAGSRKGRSGARQNKKDAWVSRIRAQRRRLKELREDGTLDRTQYRTLYNKASGGEFDSVDRLEAYIQNNYQVEIQ
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-12-31
Deposition Author(s): Li, Z.Q. , Yang, X.Y.