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FASTA Sequence PDB Format mmCIF Format
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9L7C

Type iii-b crispr-cas effector from archaeoglobus fulgidus (form 1)

PDB DOI: 10.2210/pdb9l7c/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct

Deposited: 2024-12-26
Deposition Author(s): Numata, T. , Ouchi, R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.97 Å

9l7c
Literature

Type iii-b crispr-cas effector from archaeoglobus fulgidus (form 1)

Numata, T. , Ouchi, R.

Primary Citation of Related Structures: 9L7C


Proteins
Molecule Chains Sequence Length Organism Sequence
Type III-B CRISPR module RAMP protein Cmr4 F 369 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MGSSHHHHHHSQDPMFDMFEKAVVFGLYSITPVHAGSGAELSVIALPIQRERHTGFPVIWGQSLKGVLRSRFRQLELDEKIEVESQKWKWKEKTKEVLKEKADEFIKKVEERKRDPLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVIQRLKEDFELVSEIENDIELKQILSRFKVELSNNETIAGNALILNGENKVILEDIVLKVKSDSNVIENLVEVLKTLFGDNFFGKPIESIKERIAIVSDDVFKSFTRFSTEIVARVRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKENLPKEVDNTQKIVNVLKVTFNNAFLQIGGDETVGKGFVKVRAGVLTGGHKGN
Type III-B CRISPR module RAMP protein Cmr4 D 369 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MGSSHHHHHHSQDPMFDMFEKAVVFGLYSITPVHAGSGAELSVIALPIQRERHTGFPVIWGQSLKGVLRSRFRQLELDEKIEVESQKWKWKEKTKEVLKEKADEFIKKVEERKRDPLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVIQRLKEDFELVSEIENDIELKQILSRFKVELSNNETIAGNALILNGENKVILEDIVLKVKSDSNVIENLVEVLKTLFGDNFFGKPIESIKERIAIVSDDVFKSFTRFSTEIVARVRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKENLPKEVDNTQKIVNVLKVTFNNAFLQIGGDETVGKGFVKVRAGVLTGGHKGN
Type III-B CRISPR module RAMP protein Cmr4 E 369 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MGSSHHHHHHSQDPMFDMFEKAVVFGLYSITPVHAGSGAELSVIALPIQRERHTGFPVIWGQSLKGVLRSRFRQLELDEKIEVESQKWKWKEKTKEVLKEKADEFIKKVEERKRDPLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVIQRLKEDFELVSEIENDIELKQILSRFKVELSNNETIAGNALILNGENKVILEDIVLKVKSDSNVIENLVEVLKTLFGDNFFGKPIESIKERIAIVSDDVFKSFTRFSTEIVARVRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKENLPKEVDNTQKIVNVLKVTFNNAFLQIGGDETVGKGFVKVRAGVLTGGHKGN
CRISPR system Cmr subunit Cmr5 H 155 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MDIREIEQERASFAFKVVSDIKDKYSQNKKVQGKYSSYAEKAPTIILNNGLGATLAFFLSKLEKPIDDVDYKSINPESFGNAENIAYAFLYKHLSTWLAEGNGKDSAFSGLTNGEDPLKYIMEKTAIDVAISTEEALSILNWIKKFAKAMLEEEL
CRISPR system Cmr subunit Cmr5 G 155 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MDIREIEQERASFAFKVVSDIKDKYSQNKKVQGKYSSYAEKAPTIILNNGLGATLAFFLSKLEKPIDDVDYKSINPESFGNAENIAYAFLYKHLSTWLAEGNGKDSAFSGLTNGEDPLKYIMEKTAIDVAISTEEALSILNWIKKFAKAMLEEEL
Type III-B CRISPR module RAMP protein Cmr6 I 343 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MKSNVVVKYPVNSELANYAEKFWKKELAIYNLSLILNKMTPFVKRRSESYKSSLSAVKEIFKNVDDFQNFLNSVLRRSLDEYRVFFENYERLFNSFSSKIFSMRTKSRLVVGLGDESVYETSIRLHRNYGVPYIPGSALKGVAKHYAFSILARENGDEILRIYESVKEDLKARIAKRDKIKKNDVPEDYYLTAAVIQELFEKKFDELGAIRNTRVEIGDTVISVGDIVKIFGTQKEEGSVIFFDAFPTPEQLKDKPNLELDIMNPHYQPYYQHGEPPGDWHSPNPIFFLTVPAGVEFTFAVASRDLDDLAEKAEKLLKEALKKFGVGAKTSLGYGRFDARDDR
Cmr1 C-terminal domain-containing protein A 329 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MCMYSATFTLEAITPVFMRGANQSKAEIRAASIKGLMRWWFRALSGSYFGNDVEGLRRVEEYVFGSTKRESRVVVEVVKEHVEERFCPLPMVWKKKKGVTTRVSQRAIAPGSKFTLLLTSDDEEVLKLACYSLIGLVYFGGIGFRCSRGAGSLKISSLKSDVQLIDLPKNKNQLGQMVNDLTVEIAKILKKTFLCDHENKNCTSYSSFWCFYLFLWGEKAELEEVYYRSNNLENERLTLLDLFEKEFKNKNNHLSNYGYRDFVFGLPRGTKKDRRASPIKVGITELSEKYHVRVSVFKTKIFKPGMNVKWDNIFVFLENIGAERIYPER
GGDEF domain-containing protein B 1004 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MGQYFRVSGKYRGRENLPREVNKMADNEFWLNKIRAFFHDPPDKSFELKTHERRASFILGELKPSKSLKRIIKNADIQASSLQRVDLEKSIHKKELKSTFDRIHNTEKYEYIGQPIIRHPVTGEIKEYGTILANLPQTQREVYDVDDEGKEDYEEQFQEILSRILKIEKKVFDDFKNRYSDPKDLYISLWAFYAEKLKEALEEEFSASFAEEFVNLPAYTLSPDHTLFDHADATSAIFGAEIDGKKPVLVLFKISPVQKFIADARKEKDLWAASHMLSTLTFKAISFIADKFGPDVVIYPHLRGNPFFHAWLHSKKIWEFSDSHSLKIASVPNKFLALVGVSDEKELNNLREGIRNEIESFLADLFDKLWNEVIVGALEHSDALKHLGDKKEIHKEILLKRFTLTLSSLKIHDVDVSGSKEEAYEKVKDFVRSLGLPNAIESKYLQWLDMLGSVEASNNRPTKYDLYSLYYEILTVLNAIESTHFDKPAEPAGYKCTLCGEHLAIGGESREMMENVWGKIHKRWPSHLRSNERLCAVCAVKRFYPKFIETLDIFEGVGKVVPDIESVSEVAMCRRTKHGITWKEVYDYLRGLKNVDDEKLLGKLENLKHSVQTLINNVKSELKSRKVYPEEFLEGLNRNFSNEILYSERLRDFNTLLDTLGFDAAKLGLDDVKNYETMISELRERLSEVYKMLGEPPKYYAILMMDGDEMGKLLSGEKLKTAEHYLHSAILERVSDALRVKAKTVRRLITPAAHSSISRALKNFSVNHVPDVVRKGNGTLIYSGGDDVLVLLPVDTAFDVATELAMTFSTSWNGWEMLPGNKLSAGLLIVHYKHPLYDALEKTRELLQKAKKLGRNAIAVGLLKRSGSYYESVVNFETLEDAKAVANLLVKEQVSPRIIYELLNFADVISKEFLHQLVKYEAVRHSIDKNLAEEFQSVFARGHQGVRVELEGNDEEINKYISDGANLETFLDKYEKAVDVIRKQVRGFLNLVKILYESIRGGAK
Type III-B CRISPR module-associated protein Cmr3 C 341 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MILVMKPYDSLLFREPRPFDVNNHVARTILPLPQTLAGAVRSAIYVKYGSKVKDLIGFGKEEPEFEILGHFFYRYDGKFELLVESPHDVTQNLGLVKPHRIDKLGITILMDSEGIKFRPFNGFLKFSGLIDYLQGRIAEDSVVERQKIFKKERRVGIALTKAKVTKEEHFYQVEMLRFSDDCGIAVWVEDGVDFDDEGILGVGGERRFVKFEKREEPECITNLRSKWKKIRDKINETGRLKIYLATPAILGAKGYSSKLDYDLLGDIGIERVRSVNFIGGKPVIFSGWDFVTRKPKPTRYAVPAGSVYFVEFEGEVKLDMPYLKLGKLTKLGYGLCFMGVW

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Pf7.01 crRNA v 45 NA AUUGAAAGUUGUAGUAUGCGGUCCUUGCGGCUGAGAGCACUUCAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-12-26
Deposition Author(s): Numata, T. , Ouchi, R.