9L5V
Cryo-em structure of psii-acpii from rhodomonas sp. nies-2332
PDB DOI: 10.2210/pdb9l5v/pdb
Classification: PHOTOSYNTHESIS Organism(s): Rhodomonas Sp. Nies-2332
Deposited: 2024-12-23 Deposition Author(s): Akita, F. , Shen, J.R. , Yonehara, N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.17 Å
Cryo-em structure of psii-acpii from rhodomonas sp. nies-2332
Akita, F. , Shen, J.R. , Yonehara, N.
Primary Citation of Related Structures: 9L5V
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 | A | 374 | Rhodomonas Sp. Nies-2332 | TSTIVAWEVIYYNLYKNKKMTATLERRESASLWERFCSWITSTENRLYIGWFGVLMIPTLLTATTVYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSASIGIHFYPIWEAASLDEWLYNGGPYQLIVDHFLLGVCGWIGREWEFSYRLGMRPWISVAFTAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVVGIWFTALGIMTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGMEVMHERNAHNFPLDLAAGESLPVALTA |
| Photosystem II reaction center protein L | L | 38 | Rhodomonas Sp. Nies-2332 | MSGPNPNKQPVELNRTSLFWGLLLIFVLAVLFSSYFFN |
| Photosystem II protein M | M | 118 | Rhodomonas Sp. Nies-2332 | TPFAMHASSAALLVLACAAGAAAFAPSTPALTGLKTTAFCQGPKLSAACRTPRAAKATAPSMSLMETANQAVLLAEGGMNVSVAAYLAVLLGTFVPVVFLITLFIQSEARKAAESGTE |
| Photosystem II reaction center protein T | T | 32 | Rhodomonas Sp. Nies-2332 | METLVYTFLLIGTLGVLFFAVFFRDPPRIAKK |
| Photosystem II protein W | W | 121 | Rhodomonas Sp. Nies-2332 | DLIMLRTAVLCALIATAAAFSAAPMSGLQLRSGKTAMTMKSEGPMAAMNANVAKALAPAVAAFSVAAPAFAEGTGEALGVDDGRLLVPLVLIPVFVALLYGNFASTQDNEDFFDTYDQRRK |
| Photosystem II reaction center X protein | X | 39 | Rhodomonas Sp. Nies-2332 | MTPSFSAFINSLLAGLFIVIIPIGTALLIVSQSDRLTRN |
| Photosystem II reaction center protein Psb30 | Y | 34 | Rhodomonas Sp. Nies-2332 | MPNLQTVAQLISLFLILTSGPAIIVLIALRRGNL |
| Photosystem II reaction center protein Z | Z | 62 | Rhodomonas Sp. Nies-2332 | MVAILQLLVSMLILLSFALVVSVPVILVSPGEWEKSKGLVYTGAGLWFGLVIMTAAFNSFVI |
| ACPII-1 | 1 | 234 | Rhodomonas Sp. Nies-2332 | MLRSAVLATVAVSASAFTSPALFTRTSTRPAVSTAPTMQLYREGVLQGLGTDAIPGTDRPKNLDGALVGDVGFDPLGFSNWLDLRWAREAEIKHGRVAMLAATGMIVQDVYKFPGVQKTFGDASMMKLHNVAVDQGAMQQLFLWITVLETLTGIPAIIQTLNGSERQPGDFGFDPLGCGRNPETLARRQLVELKNGRLAMIAVGGMVHHYLLVGRGPIEFVKNIPNFKNPLPPF |
| ACPII-1 | N | 234 | Rhodomonas Sp. Nies-2332 | MLRSAVLATVAVSASAFTSPALFTRTSTRPAVSTAPTMQLYREGVLQGLGTDAIPGTDRPKNLDGALVGDVGFDPLGFSNWLDLRWAREAEIKHGRVAMLAATGMIVQDVYKFPGVQKTFGDASMMKLHNVAVDQGAMQQLFLWITVLETLTGIPAIIQTLNGSERQPGDFGFDPLGCGRNPETLARRQLVELKNGRLAMIAVGGMVHHYLLVGRGPIEFVKNIPNFKNPLPPF |
| ACPII-2 | 2 | 215 | Rhodomonas Sp. Nies-2332 | MLRTALIAACVASASAFAPGFAPMAMKSRSSAVSSMRMQEGDFSAAVPFLKRPTNLDGQYIGDVGFDPLGFSDVFDLRVLREAELKHGRFAMLATLGFIVQELYTFPFFPKMAPVDAHDYFVKQGGGSQIIFWISFVELFGVVALFETLQGKREPGDFAFDPLGLAKDEATLERYRLAEVKHARLAMIAIGGFIHQYWVTKQTVLEQLGNFKSLA |
| ACPII-2 | O | 215 | Rhodomonas Sp. Nies-2332 | MLRTALIAACVASASAFAPGFAPMAMKSRSSAVSSMRMQEGDFSAAVPFLKRPTNLDGQYIGDVGFDPLGFSDVFDLRVLREAELKHGRFAMLATLGFIVQELYTFPFFPKMAPVDAHDYFVKQGGGSQIIFWISFVELFGVVALFETLQGKREPGDFAFDPLGLAKDEATLERYRLAEVKHARLAMIAIGGFIHQYWVTKQTVLEQLGNFKSLA |
| ACPII-3 | 3 | 182 | Rhodomonas Sp. Nies-2332 | DRSYSMPFLERPPALDGSLAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGCTGFITQEKIQLPLPGFDNKVATEAFFSVPAGGLWQIFFTLGAIEILSNGGKLAPGDMFADGRAPGDLGFDPLNLSGDDAALRRFILAELKHCRLAMIGLGGMLHQMLITKQGPLDQLANFQPIQYYGL |
| ACPII-3 | P | 182 | Rhodomonas Sp. Nies-2332 | DRSYSMPFLERPPALDGSLAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGCTGFITQEKIQLPLPGFDNKVATEAFFSVPAGGLWQIFFTLGAIEILSNGGKLAPGDMFADGRAPGDLGFDPLNLSGDDAALRRFILAELKHCRLAMIGLGGMLHQMLITKQGPLDQLANFQPIQYYGL |
| Photosystem II CP47 reaction center protein | B | 508 | Rhodomonas Sp. Nies-2332 | GLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARIGVTDSWGGWSITGESVANPGFWSFEGVALAHIGLSGLLFLAAVWHWVYWDLELFRDPRTGNPALDLPKIFGIHLLLSGVLCFGFGAFHVTGAWGPGIWVSDAYGITGKVQPVAPAWGPEGFNPFNPSGVASHHIAAGILGFAAGIFHIAVRPPQRLYRALRMGNIETVLSSSIAAVFWSAFITTGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGLSLSEAWSRIPDKLAFYDYVGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTTSFYGGKLNGQVFTDAPTVKKYARKAQLGEVMEFDRTTLESDGVFRSSPRGWYTFGHANFALLFFLGHLWHGSRTLFRDVFSGIGAEVTEQVEFGAFQKLGDRSTKKQGAV |
| ACPII-4 | 4 | 200 | Rhodomonas Sp. Nies-2332 | LPRTANRAAAKTSPTMQLYKEGVLQGITVNAIPKSERPFGLDGTYVGDVGFDPLGFSSIIDMRWLREAELKHGRVCMLAATGMIVQDVYQFPGVTKSFGDAKMTTLHDVAVKQGSMQQLLVWLGLLEIFGFVAIVQMLQGSDRQPGDFGFDPLNCAANPDTLARRQLVELKNGRLAMIATAGMLHHFFITGKGPIQLITG |
| ACPII-4 | Q | 200 | Rhodomonas Sp. Nies-2332 | LPRTANRAAAKTSPTMQLYKEGVLQGITVNAIPKSERPFGLDGTYVGDVGFDPLGFSSIIDMRWLREAELKHGRVCMLAATGMIVQDVYQFPGVTKSFGDAKMTTLHDVAVKQGSMQQLLVWLGLLEIFGFVAIVQMLQGSDRQPGDFGFDPLNCAANPDTLARRQLVELKNGRLAMIATAGMLHHFFITGKGPIQLITG |
| ACPII-5 | 5 | 228 | Rhodomonas Sp. Nies-2332 | MFRTTLALAAVAGAAAFAPAPAFAPKASIRAATNTAPRMAVFQGDFSESVPFLKTPTNLDGSLPGDVGFDPLGFSEVFDIRVLREAELKHGRIAMLATLGYLVQEAYVFPFFDKVPPIQAHDVLVKSGGMSQILLWTSFLEIFGGIALFQTIQGRRYPGDFAFDPLGLSQGKNAEKLERYQLAEIKHSRLAMLAFSGFVHQGFITKQGVLEQLGNFKPIPGFPEATFF |
| ACPII-5 | R | 228 | Rhodomonas Sp. Nies-2332 | MFRTTLALAAVAGAAAFAPAPAFAPKASIRAATNTAPRMAVFQGDFSESVPFLKTPTNLDGSLPGDVGFDPLGFSEVFDIRVLREAELKHGRIAMLATLGYLVQEAYVFPFFDKVPPIQAHDVLVKSGGMSQILLWTSFLEIFGGIALFQTIQGRRYPGDFAFDPLGLSQGKNAEKLERYQLAEIKHSRLAMLAFSGFVHQGFITKQGVLEQLGNFKPIPGFPEATFF |
| ACPII-6 | 6 | 174 | Rhodomonas Sp. Nies-2332 | NAMPFLERPPKLDGSLAGDVGFDPVGFSNYFDIRWLREAELKHGRVCMLGVTGLLVQEAICLPQFANGKTPVDDFFVVPAAGLWQVFFTIGAVEFFSNGFKLTPGDMFSEGREAGDLGFDPLGCGKNPDALARRRLVEVKNGRLAMIAFGGMLHQQLLTGQGTLEQLANFKAIN |
| ACPII-6 | S | 174 | Rhodomonas Sp. Nies-2332 | NAMPFLERPPKLDGSLAGDVGFDPVGFSNYFDIRWLREAELKHGRVCMLGVTGLLVQEAICLPQFANGKTPVDDFFVVPAAGLWQVFFTIGAVEFFSNGFKLTPGDMFSEGREAGDLGFDPLGCGKNPDALARRRLVEVKNGRLAMIAFGGMLHQQLLTGQGTLEQLANFKAIN |
| Psb-gama_linker | G | 292 | Rhodomonas Sp. Nies-2332 | LTTRIMARTVAVLACSLLLFAPSSHAFAPAGVARVGMPLRSNAVSARSARVTPAKMAMDPSQISHIADGAQTFLSTLDTVPFIDEVTGEPQGFTSPKNHFASVIGLWVLFALPVWSAAYKQAGCTTPDWFGVSQVAEDAPGVGLLAKAAPEYNGPSFREGLEYVFSFVWKPPILIAWKPRTVYDRDAMDPARDTVVSKLYKGLGGALDKTAVYDEEDQLLILSDLVTFEETDLGRRREKIAEQAGWYTGNPSFGRSLIEYSEQTRKGKKDMGTVTISTEELAKLRAEAAKKE |
| Photosystem II CP43 reaction center protein | C | 486 | Rhodomonas Sp. Nies-2332 | MKVFALGWLLKISLMKTLYSLRRFYHVETPFNSNIGIAGRDIESTGFAWWSGNSRLINVSGKLLGAHVAHAGLMVFWCGAMTLFEVAHYIPEKPLYEQGLILLPHLASLGWGVGPGGEIVDIYPYFVVGILHIISSAVLGFGGVYHSLIGPDTLEESFPAFGYDWRDKNKITTILGIHLVILGFGALLLVVKAMYLGGLYDTWAPGGGDVRIIDNPTLNPAVIIGYVLKSPWGGDGWICSVNNMEDIVGGHIWIGFTCIAGGFWHILTKPFAWARRAYVWSGEAYLSYSLVAVSLMGFIASQYSWYNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGASVASAQGPTGLGKYLMRSPSGEIILGGETQRFWDLRAPWIEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLTCAHFLLGFVFYIGHLWHAGRARAAAAGFEKGINRENEPVLSLRPI |
| Photosystem II D2 protein | D | 351 | Rhodomonas Sp. Nies-2332 | MTIAIGQEEGRGWFDLADDWLKRDRFVFVGWSGLLLFPTSYLSIGGWFTGTTFVTSWYTHGLASSYLEGCNFFTAAVSTPANSMGHSLLLLWGPEAQGDFTRWCQIGGLWAFCALHGSFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAIFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFIQGFHNFTLNPFHMMGVAGILGAALLCAIHGATVQNTIFEDGDAANTFRAFTPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPLAGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRSWMAAQDQPHENFIFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 84 | Rhodomonas Sp. Nies-2332 | MSGGSTGERPFSDIITSIRYWIIHSITIPALFVAGWLFVSTGLAYDIFGTPRPNEYFTQERQQVPLVNDRFSAKQELEDLTKGL |
| Cytochrome b559 subunit beta | F | 42 | Rhodomonas Sp. Nies-2332 | MSKIKQPISYPIFTFRWLAIHGLAVPTVFFLGAITSMQFIQR |
| Photosystem II reaction center protein H | H | 67 | Rhodomonas Sp. Nies-2332 | MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGFVMLLFAVFLLIILQIYNSSLIIENVDVDWASLGS |
| Photosystem II reaction center protein I | I | 38 | Rhodomonas Sp. Nies-2332 | MFTLKIVVYTTVTLFVSLFTFGFLSNDASRNPNRKDLE |
| Photosystem II reaction center protein K | K | 45 | Rhodomonas Sp. Nies-2332 | MEGIFLLAKLPEAYAVFKPIIDVAPVIPVFFLLLAFVWQAAVGFR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-12-23 Deposition Author(s): Akita, F. , Shen, J.R. , Yonehara, N.