Cryo-em structure of reduced form of formate dehydrogenase from rhodobacter aestuarii (rafdh) with nadh
PDB DOI: 10.2210/pdb9ktl/pdb
Classification: OXIDOREDUCTASE Organism(s): Rhodobacter Aestuarii
Deposited: 2024-12-02 Deposition Author(s): Zhang, K. , Zhang, L.
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| formate dehydrogenase | A | 958 | Rhodobacter Aestuarii | MKDLIIPPLDWTQDMGTPARHGAPVTLTVDGVEVTVPAGTSVLRAAAQAGISIPKLCATDSVEPVGSCRLCMVEIEGMRGMPSSCTTPVAAGMQVHTQTPQLQKLRRGVMELYISDHPLDCLTCAANGDCELQDMAGAVGLREVRYTKGENHFEVRQGGEANPCYIPKDTSNPYFSYDPAKCIVCMRCVRACEEVQGTFALTVDGRGFEARISPAADNFLASDCVSCGACVQACPTATLVEKSVEEIGTPERKVVTTCAYCGVGCSFEAHMRGEELVRMVPWKGGAANRGHSCVKGRFAYGYATHRDRILKPMIREKVSDPWREVSWEEALGFTAARLNAARATHGADALGVITSSRCTNEETYLVQKLARAVFGTNNTDTCARVCHSPTGYGLKQTFGTSAGTQDFDSVEDTDLALVIGANPTDGHPVFASRLRKRLRAGAKLIVVDPRRIDLLETPHIGDSWHLPLRPGTNVAVLVALAHVIVTEKLYDAAFISERCDGDEWADYAEFVSNPEYAPEAVESLTGVPADTLREAARAYAAAPNAAIYYGLGVTEHSQGSTTVIAIANLAMMTGNIGRPGVGVNPLRGQNNVQGSCDMGSFPHELPGYRHVADDAARSLFEKAWGVALSSEPGLRIPNMLDAAVAGQFKALYVQGEDILQSDPDTRHVAAGLAAMDLVIVHDLFLNETANYAHVFLPGSSFLEKDGTFTNAERRINRVRRVMRPKNGYADWEVTQLLANALGAGWAYTHPREIMAEIAATTPGFANVTYEMLDARGSVQWPCNEAAPEGSPIMHVDGFVRGKGRFIRTAYLPTDERTGPRFPLLLTTGRILSQYNVGAQTRRTENVAWHAEDRLEIHPTDAENRGIREGDWVRVASRAGETTLRATVTDRVSPGVVYTTFHHPDTQANVVTTDNSDWATNCPEYKVTAVQVAPSNGPSAWQEDYTAQATAARRIEAAE |
| formate dehydrogenase | B | 958 | Rhodobacter Aestuarii | MKDLIIPPLDWTQDMGTPARHGAPVTLTVDGVEVTVPAGTSVLRAAAQAGISIPKLCATDSVEPVGSCRLCMVEIEGMRGMPSSCTTPVAAGMQVHTQTPQLQKLRRGVMELYISDHPLDCLTCAANGDCELQDMAGAVGLREVRYTKGENHFEVRQGGEANPCYIPKDTSNPYFSYDPAKCIVCMRCVRACEEVQGTFALTVDGRGFEARISPAADNFLASDCVSCGACVQACPTATLVEKSVEEIGTPERKVVTTCAYCGVGCSFEAHMRGEELVRMVPWKGGAANRGHSCVKGRFAYGYATHRDRILKPMIREKVSDPWREVSWEEALGFTAARLNAARATHGADALGVITSSRCTNEETYLVQKLARAVFGTNNTDTCARVCHSPTGYGLKQTFGTSAGTQDFDSVEDTDLALVIGANPTDGHPVFASRLRKRLRAGAKLIVVDPRRIDLLETPHIGDSWHLPLRPGTNVAVLVALAHVIVTEKLYDAAFISERCDGDEWADYAEFVSNPEYAPEAVESLTGVPADTLREAARAYAAAPNAAIYYGLGVTEHSQGSTTVIAIANLAMMTGNIGRPGVGVNPLRGQNNVQGSCDMGSFPHELPGYRHVADDAARSLFEKAWGVALSSEPGLRIPNMLDAAVAGQFKALYVQGEDILQSDPDTRHVAAGLAAMDLVIVHDLFLNETANYAHVFLPGSSFLEKDGTFTNAERRINRVRRVMRPKNGYADWEVTQLLANALGAGWAYTHPREIMAEIAATTPGFANVTYEMLDARGSVQWPCNEAAPEGSPIMHVDGFVRGKGRFIRTAYLPTDERTGPRFPLLLTTGRILSQYNVGAQTRRTENVAWHAEDRLEIHPTDAENRGIREGDWVRVASRAGETTLRATVTDRVSPGVVYTTFHHPDTQANVVTTDNSDWATNCPEYKVTAVQVAPSNGPSAWQEDYTAQATAARRIEAAE |
| Formate dehydrogenase delta subunit | G | 70 | Rhodobacter Aestuarii | MSDEKLIRMANQIAAFFAVQPADRAEGVAAHISDNWAAPMRAALLAHIAAGGAGLDALVVDAAPHIRPAG |
| Formate dehydrogenase delta subunit | H | 70 | Rhodobacter Aestuarii | MSDEKLIRMANQIAAFFAVQPADRAEGVAAHISDNWAAPMRAALLAHIAAGGAGLDALVVDAAPHIRPAG |
| Formate dehydrogenase gamma subunit | F | 150 | Rhodobacter Aestuarii | MTDLARLRAILTAHEGREGALLPILHDVQADYGHIPDAALEPIAKALRLSRAEVAGVVGFYHDFRRSPAGKHVIKLCRAEACQAMGGDGVQARLEAALGLKLGETKHDITLEAAYCLGLCACAPAAMVNDALVGRLDDAAVDTIAAEVRA |
| Formate dehydrogenase gamma subunit | E | 150 | Rhodobacter Aestuarii | MTDLARLRAILTAHEGREGALLPILHDVQADYGHIPDAALEPIAKALRLSRAEVAGVVGFYHDFRRSPAGKHVIKLCRAEACQAMGGDGVQARLEAALGLKLGETKHDITLEAAYCLGLCACAPAAMVNDALVGRLDDAAVDTIAAEVRA |
| Formate dehydrogenase beta subunit | C | 502 | Rhodobacter Aestuarii | MKIWVPCDAAAKACGAERVVAEITAQAAARGVSVDIRRNGTRGMVWLEPLVEVETEAGRVGFGPMTPADVPALFEDLAAHPKALGLVEEIPFFKRQTRLTFARCGRNEPLCLDQYETTGGWDGLRKALAMTPAEVVEEIISSGLRGRGGAGFPTGIKWRTVLGAAADQKYIVCNVDEGDSGSFADRMLIEGDPFCLIEGMAVAGHAVGATRGYVYIRSEYPDCISVMRAAIILAEQSGILAEAGFSLEVRVGAGAYVCGEETAMLNSIEGKRGTVRPKPPLPALEGLFGKPTVVNNLLSLAAVPWILAHGGAAYQSYGIDRSRGTIPLQVGGNVKYGGLFETGFGITLGELVMDVCGGTASGRPVKAVQVGGPLGAYHPQADFDLPFCYELFAGQGGLVGHAGLVVHDDRADMLKLARFAMEFCAVESCGTCTPCRIGAVRGVETLDRIAAGDAAALPLLDDLCDTMKYGSLCALGGFTPYPVQSAIRHFPQDFPVLREAAE |
| Formate dehydrogenase beta subunit | D | 502 | Rhodobacter Aestuarii | MKIWVPCDAAAKACGAERVVAEITAQAAARGVSVDIRRNGTRGMVWLEPLVEVETEAGRVGFGPMTPADVPALFEDLAAHPKALGLVEEIPFFKRQTRLTFARCGRNEPLCLDQYETTGGWDGLRKALAMTPAEVVEEIISSGLRGRGGAGFPTGIKWRTVLGAAADQKYIVCNVDEGDSGSFADRMLIEGDPFCLIEGMAVAGHAVGATRGYVYIRSEYPDCISVMRAAIILAEQSGILAEAGFSLEVRVGAGAYVCGEETAMLNSIEGKRGTVRPKPPLPALEGLFGKPTVVNNLLSLAAVPWILAHGGAAYQSYGIDRSRGTIPLQVGGNVKYGGLFETGFGITLGELVMDVCGGTASGRPVKAVQVGGPLGAYHPQADFDLPFCYELFAGQGGLVGHAGLVVHDDRADMLKLARFAMEFCAVESCGTCTPCRIGAVRGVETLDRIAAGDAAALPLLDDLCDTMKYGSLCALGGFTPYPVQSAIRHFPQDFPVLREAAE |
Method: ELECTRON MICROSCOPY