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FASTA Sequence PDB Format mmCIF Format
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9KBZ

Cryo-em structure of dcl4-drb4ctd-dsrna complex

PDB DOI: 10.2210/pdb9kbz/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Arabidopsis Thaliana , Synthetic Construct

Deposited: 2024-10-31
Deposition Author(s): Du, J. , Wang, C.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.18 Å

9kbz
Literature

Cryo-em structure of dcl4-drb4ctd-dsrna complex

Du, J. , Wang, C.

Primary Citation of Related Structures: 9KBZ


Proteins
Molecule Chains Sequence Length Organism Sequence
Dicer-like protein 4 A 1720 Arabidopsis Thaliana , Synthetic Construct MWSHPQFEKGSGSGSGSWSHPQFEKSYYHHHHHHHHHHDYDIPTTENLYFQGAMPYSEIGDDLRSLDFDHADVSSDLHLTSSSSVSSFSSSSSSLFSAAGTDDPSPKMEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKIQLNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSLAALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCPRLDEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCSRGDLYEMRVPVLFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFERGELIPDFVPLELQDSSRTSKSTFYLLLPLCLHDGESVISVDWVTIRNCLSSPIFKTPSVLVEDIFPPSGSHLKLANGCWNIDDVKNSLVFTTYSKQFYFVADICHGRNGFSPVKESSTKSHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHNRMQTNLEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIANVVQALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPRCPKVLGNLVQSCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKAHENITTSHPLEDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRGLPQAPSKTEDRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSGFLCDYKDDDDKGDYKDDDDKIDYKDDDDK
Double-stranded RNA-binding protein 4 B 117 Arabidopsis Thaliana , Synthetic Construct MWSHPQFEKGSGSGSGSWSHPQFEKSYYHHHHHHHHHHDYDIPTTENLYFQGAGSETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAYRLVKP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (57-MER) c 57 NA CUAAGAUCUUAUCGAACGCUAUGUUGGACUUAGGAUGAAUGACUCAUUCGCUUGUAG
RNA (55-MER) d 55 NA ACAAGCGAAUGAGUCAUUCAUCCUAAGUCCAACAUAGCGUUCGAUAAGAUCUUAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-31
Deposition Author(s): Du, J. , Wang, C.