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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9K87

Cryo-em structure of designed zinc-induced icosahedron cage-i53-zn1-hehe-5

PDB DOI: 10.2210/pdb9k87/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Escherichia Coli

Deposited: 2024-10-24
Deposition Author(s): Cao, L.X. , Qu, Y.N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.18 Å

9k87
Literature

Cryo-em structure of designed zinc-induced icosahedron cage-i53-zn1-hehe-5

Cao, L.X. , Qu, Y.N.

Primary Citation of Related Structures: 9K87


Proteins
Molecule Chains Sequence Length Organism Sequence
Cage-i53-Zn1-HEHE-5 A 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 B 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 C 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 D 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 E 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 F 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 Q 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 M 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 X 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 G 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 R 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 N 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 Y 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 H 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 S 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 O 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 Z 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 I 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 T 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 P 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 0 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 J 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 U 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 1 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 K 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 V 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 2 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 L 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 W 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 3 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 4 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 5 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 6 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Cage-i53-Zn1-HEHE-5 7 281 Escherichia Coli MGHHHHHHHHSSGLEVLFQGPGGTVEEEVIRFAEELAEEIRRVTGEAYREYAEAVRHLGEAAKAVLEGNSVEADLIVTDVLRLLERIGEEGLVKLAREVHERSFELLRKGNRVEALALILALALAVALTAVSKAFFLLGQPARLIAEYVGEKLLELRRLLEKLGVPLPEVIALLLRVLEVVEESLKAMGMEPREINRVLAAAYLTLAAELLERLGLTALAARIRRARELLLAGRVEEALHLLQDAVELLHERIRELGFEAPEELLLADLLLQRALELISSI
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-24
Deposition Author(s): Cao, L.X. , Qu, Y.N.