PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9K32

Cryo-em structure of the nbacas9-guide rna-target dna complex

PDB DOI: 10.2210/pdb9k32/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Nitrospirota Bacterium , Synthetic Construct

Deposited: 2024-10-18
Deposition Author(s): Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.85 Å

9k32
Literature

Cryo-em structure of the nbacas9-guide rna-target dna complex

Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.

Primary Citation of Related Structures: 9K32


Proteins
Molecule Chains Sequence Length Organism Sequence
HNH nuclease domain-containing protein A 736 Nitrospirota Bacterium , Synthetic Construct GSEKELVLGIAYGGKYTGLGVVDRRNNQVLYARTIKMRDDVADILKGRREQRGIRRTQQTRKKRLRELKKYLNSIGYDNSTELFKSIYSLAHKRGYDYADMPTPEEIEEMDEKEKKEWKDTQRNSRYRKEVLADVRKVMSNGGASDEQIKRVESIFNKQYRPKRFNNRILTKCKVCGKNTPLRRNVRELLLENIVRFLPLESELKETLKRTILEGQQGNINKLFRKLKFNQKDWPGKNLTDIAKNKLPGRLPFCKEHFAENEKFTTIEKSTFRLAPSLKTKIENVLTVIKDEVMPNFALDRVVMESNNFDIAAKTKGKKRLAKEEYSKGHKENRETLMESLLRETDGRCVYCGKTITLADANKDAIYPKKAGGSNIFANLVACCRSCNENKGGRTPSESGIMPNPEVVATIKNDLKKKILDDARSIKQLDFNKYMSHASIGWRHMRDRLKELTGNDKLPVERLSGIVTAYFRRWWGFKKERANDKHHALDAVILASRKDYTDEGLVAMTLKPANSDGREFDPEKHIKESEEFKRNKGSRGSALYDKNPLSIKNGKIARRYMVTEIERGKEDAVISEEWREKLKEAFDRFGVSNGKCLTDLQTKEVGLYGQKNPMSLKCAVRGAGKGQIVLIGNNAFKTNVHNVGVAVYLDEKGKKRACELKNQRLAKHFVEPQDEIKGKILFTLRKGDTVKAEDGNIYRILELGERPVVDIKWVPTSDGKKKRVKTAIHATKLTKL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Guide RNA b 195 NA GGGGAAAUUAGGUGCGCUUGGCGUUACAGUUAAGGCUCUUUGAAAAUGAUGAUUGAAACGAAAAAAGAGCCUUAAUUGUAAAACGCCUAUAUGAUGAAGGAAUGUACGCUUGGGUUUGUCCAGCCUAAGCCAAACUAAAACUACAGUCGAUAAUGACACCUUCAUUGUGGGUUAGGACAUUAAAAAAAUUUUCAG
Target DNA strand c 43 NA ACCCGTTCCCCGCCAAGCGCACCTAATTTCCCCGGGATCCTCT
Non-target DNA strand d 43 NA AGAGGATCCCGGGGAAATTAGGACGCGAACCGGGGGAACGGGT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-18
Deposition Author(s): Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.