9K2Z
Cryo-em structure of the hfmiscb-omega rna-target dna complex
PDB DOI: 10.2210/pdb9k2z/pdb
Classification: RNA BINDING PROTEIN Organism(s): Metagenome , Synthetic Construct
Deposited: 2024-10-18 Deposition Author(s): Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.78 Å
Cryo-em structure of the hfmiscb-omega rna-target dna complex
Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.
Primary Citation of Related Structures: 9K2Z
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HfmIscB | A | 540 | Metagenome , Synthetic Construct | MADLSKHHHHSGHHHTGHHHHSGSHHHTGSAAGGEEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMTAIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSSGSMAYCFVVDKNNRPLAPTKVNKGWYLVRKGRAKIKSRYPMVIQLEKEVEPDKYDESRVVVGIDDGSAHVGLAIVQKCPTKNKVVFKGTIEQRQDVKHLMDVRRGYRRYHRYHKRYRQARFNNRHSSKRSGRLAPSIKQKKDAVLRVLYQLNRWINIQEYYLEDVCMDIRAMTDGYKPYRWQYQKSSRLDENLRKAAIIRDGCKCQECGRSNCVLEVAHIKARKYGGADTIGNLITLCSGCHQKTEGREREFEDRYFKIIGSKPKRFDYAMHVMQGKNYLRERISELGPLHLTNGGETANKRIEWNIVKSHSNDAICITDCISDTCDVKEWIIKPMRRKSKAKTDNVLGIRHRDLVSYTYKNGEIHTGYVTALYPELLALNFQSKTKHCKKVNAQKCRLLWKFDKIYWLEQCV |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Omega RNA | b | 358 | NA | GGAAUUGUGAGCGGAUAACAAUUCCCCAGGACUAAUUAUUAAGCAGUCUAAUAUAUAGACAAAAGUGUAAACAAGUGGACAAGUGUAUAAUUACAUUUCUUGUUUACACUUGCUUAACAAUAGGUUUCAAGCCUUAGUGACUGCUACUAUCGAAAGAUAUGUUGCAGAUACGAACUACGUUAGGGAAAAGGUUAAAGACACACCUUUAGAUGUACUCGUCAGUCUGAAGCUCUGUGAGUGCCAAUCAAGAAACUGUGCUAAUGUCCUGUACAGAUAACAGAGAAACACAUAUACCUUCCCCGACAUUGGCAAGACGAAGAUUACUCCGAAAGGAAGGUAUCCAGAGAUGGAAAAUGAA |
| Target DNA strand | c | 49 | NA | GAATGGTTCCTCCCGGGGAATTGTTATCCGCTCACAATTCCTTAGAAAA |
| Non-target DNA strand | d | 14 | NA | GGGAGGAACCATTC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-10-18 Deposition Author(s): Nagahata, N. , Nishimasu, H. , Yamada, S. , Yamashita, K.