9J1M
Ku13-bond mycobacterium tuberculosis 70s ribosome
PDB DOI: 10.2210/pdb9j1m/pdb
Classification: RIBOSOME/ANTIBIOTIC Organism(s): Fopius Arisanus
Deposited: 2024-08-05 Deposition Author(s): Fujino, M. , Nishihara, D. , Tanaka, Y. , Yokoyama, T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.33 Å
Ku13-bond mycobacterium tuberculosis 70s ribosome
Fujino, M. , Nishihara, D. , Tanaka, Y. , Yokoyama, T.
Primary Citation of Related Structures: 9J1M
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Large ribosomal subunit protein bL32 | 0 | 57 | Fopius Arisanus | MAVPKRRKSRSNTRSRRSQWKAAKTELVGVTVAGHAHKVPRRLLKAARLGLIDFDKR |
| Small ribosomal subunit protein uS4 | D | 201 | Fopius Arisanus | MARYTGPVTRKSRRLRTDLVGGDQAFEKRPYPPGQHGRARIKESEYLLQLQEKQKARFTYGVMEKQFRRYYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFNVNGVHVNVPSYRVSQYDIVDVRDKSLNTVPFQIARETAGERPIPSWLQVVGERQRVLIHQLPERAQIDVPLTEQLIVEYYSK |
| Small ribosomal subunit protein uS5 | E | 220 | Fopius Arisanus | MAEQPAGQAGTTDNRDARGDREGRRRDSGRGSRERDGEKSNYLERVVAINRVSKVVKGGRRFSFTALVIVGDGNGMVGVGYGKAKEVPAAIAKGVEEARKSFFRVPLIGGTITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRKSEALAASVLPDRTI |
| Small ribosomal subunit protein bS6 | F | 96 | Fopius Arisanus | MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIYVVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH |
| Small ribosomal subunit protein uS7 | G | 156 | Fopius Arisanus | MPRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLKGKKSLAERIVYGALEQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVGYSRQRREKTMIERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW |
| Small ribosomal subunit protein uS8 | H | 132 | Fopius Arisanus | MTMTDPIADFLTRLRNANSAYHDEVSLPHSKLKANIAQILKNEGYISDFRTEDARVGKSLVIQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW |
| Small ribosomal subunit protein uS10 | J | 101 | Fopius Arisanus | MAGQKIRIRLKAYDHEAIDASARKIVETVVRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKTVDALMRIDLPASVDVNIQ |
| Small ribosomal subunit protein uS11 | K | 139 | Fopius Arisanus | MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPNRRRV |
| Small ribosomal subunit protein uS12 | L | 124 | Fopius Arisanus | MPTIQQLVRKGRRDKISKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQVEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAKKEKG |
| Small ribosomal subunit protein uS13 | M | 124 | Fopius Arisanus | MARLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKKAR |
| Small ribosomal subunit protein uS14B | N | 61 | Fopius Arisanus | MAKKALVNKAAGKPRFAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSSW |
| Large ribosomal subunit protein bL33A | 1 | 55 | Fopius Arisanus | MASSTDVRPKITLACEVCKHRNYITKKNRRNDPDRLELKKFCPNCGKHQAHRETR |
| Small ribosomal subunit protein uS15 | O | 89 | Fopius Arisanus | MALTAEQKKEILRSYGLHETDTGSPEAQIALLTKRIADLTEHLKVHKHDHHSRRGLLLLVGRRRRLIKYISQIDVERYRSLIERLGLRR |
| Small ribosomal subunit protein bS16 | P | 162 | Fopius Arisanus | MAVKIKLTRLGKIRNPQYRVAVADARTRRDGRAIEVIGRYHPKEEPSLIEINSERAQYWLSVGAQPTEPVLKLLKITGDWQKFKGLPGAQGRLKVAAPKPSKLEVFNAALAAADGGPTTEATKPKKKSPAKKAAKAAEPAPQPEQPDTPALGGEQAELTAES |
| Small ribosomal subunit protein uS17 | Q | 135 | Fopius Arisanus | MAEAKTGAKAAPRVAKAAKAAPKKAAPNDAEAIGAANAANVKGPKHTPRTPKPRGRRKTRIGYVVSDKMQKTIVVELEDRMRHPLYGKIIRTTKKVKAHDEDSVAGIGDRVSLMETRPLSATKRWRLVEILEKAK |
| Small ribosomal subunit protein bS18A | R | 84 | Fopius Arisanus | MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR |
| Small ribosomal subunit protein uS19 | S | 93 | Fopius Arisanus | MPRSLKKGPFVDEHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTESMVGHKLGEFAPTRTFKGHIKDDRKSKRR |
| Small ribosomal subunit protein bS20 | T | 86 | Fopius Arisanus | MANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDKAASKGVIHKNQAANKKSALAQALNKL |
| Large ribosomal subunit protein bL25 | V | 215 | Fopius Arisanus | MAKSASNQLRVTVRTETGKGASRRARRAGKIPAVLYGHGAEPQHLELPGHDYAAVLRHSGTNAVLTLDIAGKEQLALTKALHIHPIRRTIQHADLLVVRRGEKVVVEVSVVVEGQAGPDTLVTQETNSIEIEAEALSIPEQLTVSIEGAEPGTQLTAGQIALPAGVSLISDPDLLVVNVVKAPTAEELEGEVAGAEEAEEAAVEAGEAEAAGESE |
| Large ribosomal subunit protein bL27 | W | 86 | Fopius Arisanus | MAHKKGASSSRNGRDSAAQRLGVKRYGGQVVKAGEILVRQRGTKFHPGVNVGRGGDDTLFAKTAGAVEFGIKRGRKTVSIVGSTTA |
| Mitochondrial domain of uncharacterised function (DUF1713) | X | 66 | Fopius Arisanus | MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGKMGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK |
| Large ribosomal subunit protein bL34 | 2 | 47 | Fopius Arisanus | MTKGKRTFQPNNRRRARVHGFRLRMRTRAGRSIVSSRRRKGRRTLSA |
| Large ribosomal subunit protein uL29 | Y | 77 | Fopius Arisanus | MAVGVSPGELRELTDEELAERLRESKEELFNLRFQMATGQLNNNRRLRTVRQEIARIYTVLRERELGLATGPDGKES |
| Large ribosomal subunit protein uL30 | Z | 65 | Fopius Arisanus | MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQTGGKT |
| Large ribosomal subunit protein uL2 | C | 280 | Fopius Arisanus | MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGRGGRNAHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPLRNIPAGTLIHAVELRPGGGAKLARSAGSSIQLLGKEASYASLRMPSGEIRRVDVRCRATVGEVGNAEQANINWGKAGRMRWKGKRPSVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRNANKSSNKFIVRRRRTGKKHSR |
| Small ribosomal subunit protein uS9 | I | 151 | Fopius Arisanus | MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR |
| Large ribosomal subunit protein bL35 | 3 | 64 | Fopius Arisanus | MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTSLLNG |
| Large ribosomal subunit protein bL36 | 4 | 37 | Fopius Arisanus | MKVNPSVKPICDKCRLIRRHGRVMVICSDPRHKQRQG |
| 30S ribosomal protein THX | 7 | 24 | Fopius Arisanus | MAKRGRKKRDRKYSKANHGKRPNS |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| tRNA | u | 3 | NA | CCA |
| 23S rRNA | a | 3138 | NA | UUGUAAGUGUCUAAGGGCGCAUGGUGGAUGCCUUGGCAUCGAGAGCCGAUGAAGGACGUGGGAGGCUGCGAUAUGCCUCGGGGAGCUGUCAACCGAGCGUGGAUCCGAGGAUUUCCGAAUGGGGAAACCCAGCACGAGUGAUGUCGUGCUACCCGCAUCUGAAUAUAUAGGGUGCGGGAGGGAACGCGGGGAAGUGAAACAUCUCAGUACCCGUAGGAGGAGAAAACAAUUGUGAUUCCGCAAGUAGUGGCGAGCGAACGCGGAACAGGCUAAACCGCACGCAUGGGUAACCGGGUAGGGGUUGUGUGUGCGGGGUUGUGGGAGGAUAUGUCUCAGCGCUACCCGGCUGAGAGGCAGUCAGAAAGUGUCGUGGUUAGCGGAAGUGGCCUGGGAUGGUCUGCCGUAGACGGUGAGAGCCCGGUACGCGAAAACCCGGCACCUGCCUAGUAUCAAUUCCCGAGUAGCAGCGGGCCCGUGGAAUCCGCUGUGAAUCCGCCGGGACCACCCGGUAAGCCUAAAUACUCCUCGAUGACCGAUAGCGGAUUAGUACCGUGAGGGAAUGGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUACCUGAAACCGUGUGCCUACAAUCCGUCAGAGCCUCCUUUUCCUCUCCGGAGGAGGGUGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUCAGGGACAUGUCGCAAGGUUAACCCGUGUGGGGUAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGACCCACACGCGCAUACGCGCGUGUGAAUAGUGGCGUGUUCUGGACCCGAAGCGGAGUGAUCUACCCAUGGCCAGGGUGAAGCGCGGGUAAGACCGCGUGGAGGCCCGAACCCACUUAGGUUGAAGACUGAGGGGAUGAGCUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUUGCGUGGUUCACCGCGGAGGUAGAGCUACUGGAUGGCCGAUGGGCCCUACUAGGUUACUGACGUCAGCCAAACUCCGAAUGCCGUGGUGUAAAGCGUGGCAGUGAGACGGCGGGGGAUAAGCUCCGUACGUCGAAAGGGAAACAGCCCAGAUCGCCGGCUAAGGCCCCCAAGCGUGUGCUAAGUGGGAAAGGAUGUGCAGUCGCAAAGACAACCAGGAGGUUGGCUUAGAAGCAGCCACCCUUGAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUGUGCGCCGAUAAUGUAGCGGGGCUCAAGCACACCGCCGAAGCCGCGGCACAUCCACCUUGUGGUGGGUGUGGGUAGGGGAGCGUCCCUCAUUCAGCGAAGCCACCGGGUGACCGGUGGUGGAGGGUGGGGGAGUGAGAAUGCAGGCAUGAGUAGCGACAAGGCAAGUGAGAACCUUGCCCGCCGAAAGACCAAGGGUUCCUGGGCCAGGCCAGUCCGCCCAGGGUGAGUCGGGACCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGACAACGGGUUGAUAUUCCCGUACCCGUGUGUGGGCGCCCGUGACGAAUCAGCGGUACUAACCACCCAAAACCGGAUCGAUCACUCCCCUUCGGGGGUGUGGAGUUCUGGGGCUGCGUGGGAACUUCGCUGGUAGUAGUCAAGCGAAGGGGUGACGCAGGAAGGUAGCCGUACCAGUCAGUGGUAACACUGGGGCAAGCCGGUAGGGAGAGCGAUAGGCAAAUCCGUCGCUCACUAAUCCUGAGAGGUGACGCAUAGCCGGUUGAGGCGAAUUCGGUGAUCCUCUGCUGCCAAGAAAAGCCUCUAGCGAGCACACACACGGCCCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGCAUACCAAGGCGUACGAGAUAACUAUGGUUAAGGAACUCGGCAAAAUGCCCCCGUAACUUCGGGAGAAGGGGGACCGGAAUAUCGUGAACACCCUUGCGGUGGGAGCGGGAUCCGGUCGCAGAAACCAGUGAGGAGCGACUGUUUACUAAAAACACAGGUCCGUGCGAAGUCGCAAGACGAUGUAUACGGACUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGACCCGUUAACCCGCAAGGGUGAAGCGGAGAAUUUAAGCCCCAGUAAACGGCGGUGGUAACUAUAACCAUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCUCAACUGUCUCAACCAUAGACUCGGCGAAAUUGCACUACGAGUAAAGAUGCUCGUUACGCGCGGCAGGACGAAAAGACCCCGGGACCUUCACUACAACUUGGUAUUGAUGUUCGGUACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAACCUCGACGCCAGUUGGGGCGGAGUCGUUGUUGAAAUACCACUCUGAUCGUAUUGGGCAUCUAACCUCGAACCCUGAAUCGGGUUUAGGGACAGUGCCUGGCGGGUAGUUUAACUGGGGCGGUUGCCUCCUAAAAUGUAACGGAGGCGCCCAAAGGUUCCCUCAACCUGGACGGCAAUCAGGUGGCGAGUGUAAAUGCACAAGGGAGCUUGACUGCGAGACUUACAAGUCAAGCAGGGACGAAAGUCGGGAUUAGUGAUCCGGCACCCCCGAGUGGAAGGGGUGUCGCUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGCAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCCGCGCGCGUCAGAAACUUGAGGAAACCUGUCCCUAGUACGAGAGGACCGGGACGGACGAACCUCUGGUGCACCAGUUGUCCCGCCAGGGGCACCGCUGGAUAGCCACGUUCGGUCAGGAUAACCGCUGAAAGCAUCUAAGCGGGAAACCUUCUCCAAGAUCAGGUUUCUCACCCACUUGGUGGGAUAAGGCCCCCCGCAGAACACGGGUUCAAUAGGUCAGACCUGGAAGCUCAGUAAUGGGUGUAGGGAACUGGUGCUAACCGGCCGAAAACUUACAACA |
| 5S rRNA | b | 115 | NA | UUACGGCGGCCACAGCGGCAGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAGCUAAGCCUGCCAGCGCCGAUGAUACUGCCCCUCCGGGUGGAAAAGUAGGACACCGCCGAACA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-08-05 Deposition Author(s): Fujino, M. , Nishihara, D. , Tanaka, Y. , Yokoyama, T.