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FASTA Sequence PDB Format mmCIF Format
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9J1M

Ku13-bond mycobacterium tuberculosis 70s ribosome

PDB DOI: 10.2210/pdb9j1m/pdb

Classification: RIBOSOME/ANTIBIOTIC
Organism(s): Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2

Deposited: 2024-08-05
Deposition Author(s): Fujino, M. , Nishihara, D. , Tanaka, Y. , Yokoyama, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.33 Å

9j1m
Literature

Ku13-bond mycobacterium tuberculosis 70s ribosome

Fujino, M. , Nishihara, D. , Tanaka, Y. , Yokoyama, T.

Primary Citation of Related Structures: 9J1M


Proteins
Molecule Chains Sequence Length Organism Sequence
Large ribosomal subunit protein bL32 0 57 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAVPKRRKSRSNTRSRRSQWKAAKTELVGVTVAGHAHKVPRRLLKAARLGLIDFDKR
Small ribosomal subunit protein uS4 D 201 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MARYTGPVTRKSRRLRTDLVGGDQAFEKRPYPPGQHGRARIKESEYLLQLQEKQKARFTYGVMEKQFRRYYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFNVNGVHVNVPSYRVSQYDIVDVRDKSLNTVPFQIARETAGERPIPSWLQVVGERQRVLIHQLPERAQIDVPLTEQLIVEYYSK
Small ribosomal subunit protein uS5 E 220 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAEQPAGQAGTTDNRDARGDREGRRRDSGRGSRERDGEKSNYLERVVAINRVSKVVKGGRRFSFTALVIVGDGNGMVGVGYGKAKEVPAAIAKGVEEARKSFFRVPLIGGTITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRKSEALAASVLPDRTI
Small ribosomal subunit protein bS6 F 96 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIYVVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH
Small ribosomal subunit protein uS7 G 156 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MPRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLKGKKSLAERIVYGALEQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVGYSRQRREKTMIERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW
Small ribosomal subunit protein uS8 H 132 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MTMTDPIADFLTRLRNANSAYHDEVSLPHSKLKANIAQILKNEGYISDFRTEDARVGKSLVIQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW
Small ribosomal subunit protein uS10 J 101 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAGQKIRIRLKAYDHEAIDASARKIVETVVRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKTVDALMRIDLPASVDVNIQ
Small ribosomal subunit protein uS11 K 139 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPNRRRV
Small ribosomal subunit protein uS12 L 124 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MPTIQQLVRKGRRDKISKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQVEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAKKEKG
Small ribosomal subunit protein uS13 M 124 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MARLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKKAR
Small ribosomal subunit protein uS14B N 61 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAKKALVNKAAGKPRFAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSSW
Large ribosomal subunit protein bL33A 1 55 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MASSTDVRPKITLACEVCKHRNYITKKNRRNDPDRLELKKFCPNCGKHQAHRETR
Small ribosomal subunit protein uS15 O 89 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MALTAEQKKEILRSYGLHETDTGSPEAQIALLTKRIADLTEHLKVHKHDHHSRRGLLLLVGRRRRLIKYISQIDVERYRSLIERLGLRR
Small ribosomal subunit protein bS16 P 162 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAVKIKLTRLGKIRNPQYRVAVADARTRRDGRAIEVIGRYHPKEEPSLIEINSERAQYWLSVGAQPTEPVLKLLKITGDWQKFKGLPGAQGRLKVAAPKPSKLEVFNAALAAADGGPTTEATKPKKKSPAKKAAKAAEPAPQPEQPDTPALGGEQAELTAES
Small ribosomal subunit protein uS17 Q 135 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAEAKTGAKAAPRVAKAAKAAPKKAAPNDAEAIGAANAANVKGPKHTPRTPKPRGRRKTRIGYVVSDKMQKTIVVELEDRMRHPLYGKIIRTTKKVKAHDEDSVAGIGDRVSLMETRPLSATKRWRLVEILEKAK
Small ribosomal subunit protein bS18A R 84 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR
Small ribosomal subunit protein uS19 S 93 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MPRSLKKGPFVDEHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTESMVGHKLGEFAPTRTFKGHIKDDRKSKRR
Small ribosomal subunit protein bS20 T 86 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDKAASKGVIHKNQAANKKSALAQALNKL
Large ribosomal subunit protein bL25 V 215 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAKSASNQLRVTVRTETGKGASRRARRAGKIPAVLYGHGAEPQHLELPGHDYAAVLRHSGTNAVLTLDIAGKEQLALTKALHIHPIRRTIQHADLLVVRRGEKVVVEVSVVVEGQAGPDTLVTQETNSIEIEAEALSIPEQLTVSIEGAEPGTQLTAGQIALPAGVSLISDPDLLVVNVVKAPTAEELEGEVAGAEEAEEAAVEAGEAEAAGESE
Large ribosomal subunit protein bL27 W 86 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAHKKGASSSRNGRDSAAQRLGVKRYGGQVVKAGEILVRQRGTKFHPGVNVGRGGDDTLFAKTAGAVEFGIKRGRKTVSIVGSTTA
Mitochondrial domain of uncharacterised function (DUF1713) X 66 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGKMGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
Large ribosomal subunit protein bL34 2 47 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MTKGKRTFQPNNRRRARVHGFRLRMRTRAGRSIVSSRRRKGRRTLSA
Large ribosomal subunit protein uL29 Y 77 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAVGVSPGELRELTDEELAERLRESKEELFNLRFQMATGQLNNNRRLRTVRQEIARIYTVLRERELGLATGPDGKES
Large ribosomal subunit protein uL30 Z 65 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQTGGKT
Large ribosomal subunit protein uL2 C 280 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGRGGRNAHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPLRNIPAGTLIHAVELRPGGGAKLARSAGSSIQLLGKEASYASLRMPSGEIRRVDVRCRATVGEVGNAEQANINWGKAGRMRWKGKRPSVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRNANKSSNKFIVRRRRTGKKHSR
Small ribosomal subunit protein uS9 I 151 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR
Large ribosomal subunit protein bL35 3 64 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTSLLNG
Large ribosomal subunit protein bL36 4 37 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MKVNPSVKPICDKCRLIRRHGRVMVICSDPRHKQRQG
30S ribosomal protein THX 7 24 Mycobacterium Tuberculosis Variant Bovis Bcg Str. Pasteur 1173P2 MAKRGRKKRDRKYSKANHGKRPNS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
tRNA u 3 NA CCA
23S rRNA a 3138 NA UUGUAAGUGUCUAAGGGCGCAUGGUGGAUGCCUUGGCAUCGAGAGCCGAUGAAGGACGUGGGAGGCUGCGAUAUGCCUCGGGGAGCUGUCAACCGAGCGUGGAUCCGAGGAUUUCCGAAUGGGGAAACCCAGCACGAGUGAUGUCGUGCUACCCGCAUCUGAAUAUAUAGGGUGCGGGAGGGAACGCGGGGAAGUGAAACAUCUCAGUACCCGUAGGAGGAGAAAACAAUUGUGAUUCCGCAAGUAGUGGCGAGCGAACGCGGAACAGGCUAAACCGCACGCAUGGGUAACCGGGUAGGGGUUGUGUGUGCGGGGUUGUGGGAGGAUAUGUCUCAGCGCUACCCGGCUGAGAGGCAGUCAGAAAGUGUCGUGGUUAGCGGAAGUGGCCUGGGAUGGUCUGCCGUAGACGGUGAGAGCCCGGUACGCGAAAACCCGGCACCUGCCUAGUAUCAAUUCCCGAGUAGCAGCGGGCCCGUGGAAUCCGCUGUGAAUCCGCCGGGACCACCCGGUAAGCCUAAAUACUCCUCGAUGACCGAUAGCGGAUUAGUACCGUGAGGGAAUGGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUACCUGAAACCGUGUGCCUACAAUCCGUCAGAGCCUCCUUUUCCUCUCCGGAGGAGGGUGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUCAGGGACAUGUCGCAAGGUUAACCCGUGUGGGGUAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGACCCACACGCGCAUACGCGCGUGUGAAUAGUGGCGUGUUCUGGACCCGAAGCGGAGUGAUCUACCCAUGGCCAGGGUGAAGCGCGGGUAAGACCGCGUGGAGGCCCGAACCCACUUAGGUUGAAGACUGAGGGGAUGAGCUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUUGCGUGGUUCACCGCGGAGGUAGAGCUACUGGAUGGCCGAUGGGCCCUACUAGGUUACUGACGUCAGCCAAACUCCGAAUGCCGUGGUGUAAAGCGUGGCAGUGAGACGGCGGGGGAUAAGCUCCGUACGUCGAAAGGGAAACAGCCCAGAUCGCCGGCUAAGGCCCCCAAGCGUGUGCUAAGUGGGAAAGGAUGUGCAGUCGCAAAGACAACCAGGAGGUUGGCUUAGAAGCAGCCACCCUUGAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUGUGCGCCGAUAAUGUAGCGGGGCUCAAGCACACCGCCGAAGCCGCGGCACAUCCACCUUGUGGUGGGUGUGGGUAGGGGAGCGUCCCUCAUUCAGCGAAGCCACCGGGUGACCGGUGGUGGAGGGUGGGGGAGUGAGAAUGCAGGCAUGAGUAGCGACAAGGCAAGUGAGAACCUUGCCCGCCGAAAGACCAAGGGUUCCUGGGCCAGGCCAGUCCGCCCAGGGUGAGUCGGGACCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGACAACGGGUUGAUAUUCCCGUACCCGUGUGUGGGCGCCCGUGACGAAUCAGCGGUACUAACCACCCAAAACCGGAUCGAUCACUCCCCUUCGGGGGUGUGGAGUUCUGGGGCUGCGUGGGAACUUCGCUGGUAGUAGUCAAGCGAAGGGGUGACGCAGGAAGGUAGCCGUACCAGUCAGUGGUAACACUGGGGCAAGCCGGUAGGGAGAGCGAUAGGCAAAUCCGUCGCUCACUAAUCCUGAGAGGUGACGCAUAGCCGGUUGAGGCGAAUUCGGUGAUCCUCUGCUGCCAAGAAAAGCCUCUAGCGAGCACACACACGGCCCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGCAUACCAAGGCGUACGAGAUAACUAUGGUUAAGGAACUCGGCAAAAUGCCCCCGUAACUUCGGGAGAAGGGGGACCGGAAUAUCGUGAACACCCUUGCGGUGGGAGCGGGAUCCGGUCGCAGAAACCAGUGAGGAGCGACUGUUUACUAAAAACACAGGUCCGUGCGAAGUCGCAAGACGAUGUAUACGGACUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGACCCGUUAACCCGCAAGGGUGAAGCGGAGAAUUUAAGCCCCAGUAAACGGCGGUGGUAACUAUAACCAUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCUCAACUGUCUCAACCAUAGACUCGGCGAAAUUGCACUACGAGUAAAGAUGCUCGUUACGCGCGGCAGGACGAAAAGACCCCGGGACCUUCACUACAACUUGGUAUUGAUGUUCGGUACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAACCUCGACGCCAGUUGGGGCGGAGUCGUUGUUGAAAUACCACUCUGAUCGUAUUGGGCAUCUAACCUCGAACCCUGAAUCGGGUUUAGGGACAGUGCCUGGCGGGUAGUUUAACUGGGGCGGUUGCCUCCUAAAAUGUAACGGAGGCGCCCAAAGGUUCCCUCAACCUGGACGGCAAUCAGGUGGCGAGUGUAAAUGCACAAGGGAGCUUGACUGCGAGACUUACAAGUCAAGCAGGGACGAAAGUCGGGAUUAGUGAUCCGGCACCCCCGAGUGGAAGGGGUGUCGCUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGCAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCCGCGCGCGUCAGAAACUUGAGGAAACCUGUCCCUAGUACGAGAGGACCGGGACGGACGAACCUCUGGUGCACCAGUUGUCCCGCCAGGGGCACCGCUGGAUAGCCACGUUCGGUCAGGAUAACCGCUGAAAGCAUCUAAGCGGGAAACCUUCUCCAAGAUCAGGUUUCUCACCCACUUGGUGGGAUAAGGCCCCCCGCAGAACACGGGUUCAAUAGGUCAGACCUGGAAGCUCAGUAAUGGGUGUAGGGAACUGGUGCUAACCGGCCGAAAACUUACAACA
5S rRNA b 115 NA UUACGGCGGCCACAGCGGCAGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAGCUAAGCCUGCCAGCGCCGAUGAUACUGCCCCUCCGGGUGGAAAAGUAGGACACCGCCGAACA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-05
Deposition Author(s): Fujino, M. , Nishihara, D. , Tanaka, Y. , Yokoyama, T.