9IHP
Open state without nuqm and with flavoprotein (classification state 3) of pichia pastoris mitochondrial complex i in cmsp26 nanodiscs
PDB DOI: 10.2210/pdb9ihp/pdb
Classification: MEMBRANE PROTEIN Organism(s): Komagataella Pastoris
Deposited: 2025-02-21 Deposition Author(s): Grba, D.N. , Hirst, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.34 Å
Open state without nuqm and with flavoprotein (classification state 3) of pichia pastoris mitochondrial complex i in cmsp26 nanodiscs
Primary Citation of Related Structures: 9IHP
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 | A | 150 | Komagataella Pastoris | MIPFEALIPYAIMFAGFCLGGGVMNSAITADITKRARGPNQEIKRNVGEDEGPRNYTKPRYNTDQWDKYFAVRDLRLTGSLRGQSDNAVAEESFKTNSIQPYSNTRRPWVLRRHIIMKNSPTKWARKYSSRRDEREQEIKDDYIRGMGEH |
| Subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | J | 59 | Komagataella Pastoris | MSAHHAFKYVRGAIVPKPKVHPGYVITSKFLGGLMWFWIFYRAKQDYPVWFGLKHPWEH |
| NB2M (B12) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | K | 61 | Komagataella Pastoris | MAGNPWKRRDAWRSQGAFTRANRFRGALPGFFWGLGAFGVYCVYEKVFLTNDHHGHHEEHH |
| NIAM (ASHI) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | L | 156 | Komagataella Pastoris | MLRQAYRLAGKTNSITSSSVFIRNKSFLPHFIPKNYSYGDYPRLKPENLQKRDPYLKYDDQANKRNFNEPLHPQQDDLDMWAPDHFDFVQDSIALKWFGTFFGVLAVFSSVIYIGGLYPEKPANPRNYPFSGLAKDLGASSEEDTLLYAAKIDKSI |
| NB5M (B15) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | M | 81 | Komagataella Pastoris | MAGHGPHLLREDASFQRYGQLRDNLATYWKFNRKAARNVFIFLVAVPAGLGYLAYNYEGKTPFVGKRRTEPIFEQDYVPRK |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 | N | 111 | Komagataella Pastoris | MSSIARKAVVPFSEANKKYVSSLYRKSLRTAHDWINKTEFYRVKASEIRSRFDANKHINDPNELKVIFKETEALLEDYAHPDPIIPPCRPGGSKFERNIPPRVEARIPIDV |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 | O | 87 | Komagataella Pastoris | MGVSELPELLSHEEMKQNKIPLAYRDRCARLLVPLNKCRKEGWYMPWNCVQERHDYEQCQYLDFKRRVKELEEIKKQRDAADASADL |
| NIDM (PDSW) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | P | 92 | Komagataella Pastoris | MVDHVRSPNVSFDDIDYNNSQDLHNAQESLLREQWIRVSALKVCRKALESCYKTSGPNHYEDCREIAEKYLNMLPDHRIQGFLGYQKNDPSK |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit | Q | 140 | Komagataella Pastoris | XSSSIQRTLRNLWKNGFKKSFKQLQGYNDIKSGRLVGTDSFGNKFYEVDDPVEIHMRTRFVEYTGFWRQDMSEVEPGWHYWLAYGTDVPPNQLKPEEKSVRAYPVKKHVPNLTYTDGAYVPYNTARPKCATWDPKVTERP |
| NUMM (13 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | R | 139 | Komagataella Pastoris | MLRLTRASIRRISTKELTTARIKDISKPDENNLQQQAPNRISPWSKSQKPRAEAQDNVRFAVKDLAKQPRPYAAIDLIYKQPIRYIEHDNVAVCDGNGGAQGHPKVYINLDQNKAIPCGYCGLRFAQAAFKEDIESSQN |
| NI8M (B8) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | S | 90 | Komagataella Pastoris | XSSKFVFPKVVKELRFFLSQTGEASVPLRSFLTKTYPAIKKANPTLPILIREAYGIPPSVTARLEKGHEVKTNLEGFSADQIAKTLQSIA |
| NI9M (B9) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | B | 79 | Komagataella Pastoris | MAIGDYPVYYKQPIRWLSYHAHTRPHVFYAIAVAALGPVFMMATPLRRKFLYDDHEPLPANGYPLPNRSRDKTLTGYDD |
| Acyl carrier protein | T | 138 | Komagataella Pastoris | MLRNVSRQLLRSSKVYLPQVAVVRTQTPAFVSPSIISKRFNITQSASTLTKEDVLTRSVSVLRGFEVKTKDIDLQTTFVQDLGMDSLDLNDALVALEEEFDVVFDDKTANEIKTVGEVVDFVLANYLPTEQSINHTIR |
| Acyl carrier protein | U | 130 | Komagataella Pastoris | MNRFNHPILRTAFSKSKWNLSKYTSPLFRPSYARTMIPLRTYSSTPSLTKEIIYDRIVEILESYDNVKQGSTISPAASFSKDLGLDSLDTVEVLLELENEFSILIPDNEADEIKTVQQAVDYIAAQEDSI |
| NUFM (B13) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | V | 134 | Komagataella Pastoris | MRAFTYLRQAQEILIKANKGNPTGLTGLFQHPSPRPTLITLYKATLKNLEEKIPKESVYRTAVEAFTKERLSIVENNEIIEDIEKKIGSGLVEELIVQANEEYDLIDKMAEWKAWEELEEKPLDDQWTYFGKKL |
| BA75_04796T0 | W | 122 | Komagataella Pastoris | MTNPTAFAQTTRYVKDSTEMRTLVLNLYRRYLRHSRGFVNNYNLDIPASQVRTKIRQEFERQRFVKDLPLKNVLYMKAQMEFQELVNFWKQQCHVMQYFESIDHQNKIKGDSFVQKFLKGAQ |
| NADH-ubiquinone oxidoreductase | X | 184 | Komagataella Pastoris | XSSTHTNDSLNSSNYVDKLKDTHFVFENDKLPSEIPDVEEVGATTAPLLSAAYFIGAKCQDYNDDFMLCQKEAKGNGPIDCLKEGRRVTRCASGVLKDLNTHCSDEFRLHWQCLSFSNLEYKNCRKAESLLNKCVFEKMNLVKKIPGIPEDRQIHLKQNPVLKPVALHQDSEVAFKKAQNENSI |
| NUJM (B14.7) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | Y | 216 | Komagataella Pastoris | MSETTAEQTVVEQFHLPQPFWPTTKTKEGEYVPKDSIREASKVFIGSGVLLGGMHFRRLMQYKKGSARPGLAKYLNLFSLSKSQLIGFPVALGAFSFLSHSFANLQEGQTATGEFAASSIASLIGLSIFRTKKPLSSNVAIAVGMGSLFGFLTWAGNFNLGDNSYRAALEAGNGNEGGFDNKVIKTERQGFWEGVYRRPLSQTVEDLGEGRGIITQ |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | Z | 147 | Komagataella Pastoris | XATQDLPPISGYAPIQWKRNLPSRGFRPVIWFLGLCTATGYGFYQISLANREKIELKREKLWARAHLMPLLQAEQDRNVVRRTFAYYKREGEIMKDVPWWEVKSTYSNKDIFHPPQTVLFGKHIDRDSGLMYANSRNRFGPDEEETK |
| NUGM (30 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | C | 289 | Komagataella Pastoris | MIAARSIQRAIGTKPLAVRAVVLTTNSFRGFSKSSMSRKADEEPLPVLRDLPRPEYGELHAPVYNPAEKYKEQIEELHKFGRYIMGCLPKFVQQFSVWKDELVIYVAPSALTQVATFLKDHTSAQFKACMDVTAADYPTRTNRFDVVYNLLSVRHNSRIRIKTYASEVSPVPSVVPLFQGANWFERETYDLFGIFFEGHPDLRRIMTDYGFQGHPLRKDFPTTGYTEVRYDAEKRRVVYEPLELTQAWRNFTVGSSVWEQVGDGKDFTPESFKLPTPAPDPEPEADKKK |
| NUCM (49 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | D | 482 | Komagataella Pastoris | MFARLHAKRGWKSLARARVGSRFLSNSSIARAAQTKDNNDFYDVKTKKNDFFPVQVDGIESSLGKYEEFAKDAHEWESWNLQNEDHPEYPVKRTKIRHFTLNFGPQHPAAHGVLRLILELHGEEILRSDPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNEQVFSLAVEKLLNLEVPERGQYIRTLFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVSQDLPAGLLDDIYMWATQFGDRLDETEELLTDSRIWKQRTIGIGEVTAEDALNYGLSGVMLRGSGVPFDIRKSQPYDAYDKVDFDIAVGTKGDCYDRYLIRMTEFRQSLRIIEQCCNQMPPGPVKVEDFKVAPPPRALMKEDMEALIHHFLLYTKGYAVPAGETYTAIEAPKGEMAVYVVSDGSERPYRCKIRAPGFAHLGAFDHIARGHFLPDAVAIIGTMDLVFGEVDR |
| NUHM (24 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | E | 241 | Komagataella Pastoris | MSLLRLLPKATKPLQQRIVTVTPKRFSHMISVHRDTPKDNPEIPFEFTKENLERAKEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISVMNYVAKYLDMPPMRVYEVATFYTMYNRKPMGKYNVQVCTTTPCQLCGSDGIMKAITEHLQIRPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPERTVEILKGFQSGDIPKPGPADRHSCEPHSGPKVLTNETPYHVKDFIRDDL |
| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial | F | 473 | Komagataella Pastoris | MLRQQVGRKLVSKRFFSGLKDSDRIFQNVYSKYGEDLKSSQQRGDWYKTKEIILKGHEWLINELKASGLRGRGGAGFPSGLKYSFMPPNPNREPQYLVVNADEGEPGTCKDREIIRKEPHKLVEGCLLAGRAMNATAAYIYIRGEFYNEAVALQTAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYICGEETALIESIEGKAGKPRLKPPFPAGVGLFGRPTTVTNVETVAVTPTIFRRSGAWFASFGRDRNQGTKLFCISGHVNEPCTVEESMSIPLKELLEKHCGGIKGGWDNLLGVVPGGSSVPIMPKHVCEDVLMDFDALKDVGSGLGTAAVIVLNKQTDIIRAIQRFSAFYKHESCGQCTPCREGTTYLQRMMDRFVTGQAKEKEIDLIYELSKEIEGHTICALGDAAAWPVQGLIKSFRPEMVERIKQYEAKLGESVSYGGWTSKGKVLDGKVVSNPIPHDAHHH |
| NUAM (75 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | G | 726 | Komagataella Pastoris | MLSVKRSISRIPTARLFSTTRRQLKEVELTVDGVKVSIEAGSSIIQAAEKAGVTIPRYCYHEKLAVAGNCRMCLVEIERSPKLAASCAMPVQNGMSVLTNTPKIKKAREGVTEMLLENHPLDCPVCDQGGECDLQEQSLRYGSDRGRFHEIVGKRAVENKAIGPLIKTSMNRCIHCTRCVRFLNDVAGAPEFGTAGRGNDMQIGTYVERNVNSELSANVIDLCPVGALTSKPYAFRARPWELKRTETIDVHDALGSNVRVDTRGIEVMRVLPRLNDEINEEWISDKTRFACDGLKTQRLTKPLIRQGNTFVDATWEEALATIAEGFQKVQPKENEIKAIVGSLTDLESIVALKDLVNKLGSENVSTDGDATTVPPAHGADFRSNYIFNSTIDNIEEADQILLVGTNPRHEAAVLNARIRKVWLRSDLEVHHVGEEFDSTFELNHLGSDVNALAKALTGEVGKKLSEASKPLIIIGSGVTETQDAEAVYATVAKFVTSNANIVTPEWNGFNLLHREASRVGALDVGFTTQSPEVANTKAKFIYLLGADEIVNKDIPKDAFVVYQGHHGDLGASFADVILPGSAYTEKTATYVNTEGRVQSTRAATNPPGVAREDWMIIRALSEYLGATLPYDNLYEMRSRLADVAPHLLRHEVVEPVSEGIAKVGFQSLVKPGIQSKGVLLKNPIENFYFTDVISKSSPTMAKCVGSFGSKIEKIKDEKANSYLSFA |
| NADH-ubiquinone oxidoreductase chain 1 | H | 353 | Komagataella Pastoris | MLNNLFDFIEYIEYWLIIVAFVASVLIVVAYLTVAERKTMGYMQRRLGPNAVGYYGVLMAVADALKLLSKEIVLPHNGDIIYVMSGPLISLFSVLLSWAVIPFGPGLSLLDSEYSIIYLLASGSIGVFGTVIVGWMSNSKYTVLATVRTTAQLISYELVLTTVVFIIALIVSSLNINVIIESQYNIWYIIPFFPLCLIFFISALAETARPPFDNVEAESELVSGHMTELSASPFVIFFLSEYCSMVLMSTLTAIFFFGGYLPFSNTIHHLILNLFDQHSIYYFIIEGILLSGYLAIKANFFMFSFVWIRAAAPRLRYDLLILFCWYVLLPIVFAIVVFAPGILYCFDALPVII |
| NUIM (TYKY) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I) | I | 222 | Komagataella Pastoris | MFRPLALKPSCRAINRIPVCRFSTGLIAQKPTLALTSGSIQGTHPEGFRLPRPKTWEESSESALSKATKWYLLSEIFRGLYITLEMYFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPNVEYATETREELLYNKEKLLANGDKWEQEIQYALDADAPYR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-02-21 Deposition Author(s): Grba, D.N. , Hirst, J.