9IFM
Structure of unstacked c2s2-type psii-lhcii supercomplex from pisum sativum
PDB DOI: 10.2210/pdb9ifm/pdb
Classification: PHOTOSYNTHESIS Organism(s): Pisum Sativum
Deposited: 2025-02-18 Deposition Author(s): Fadeeva, M. , Kandiah, E. , Klaiman, D. , Nelson, N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.2 Å
Structure of unstacked c2s2-type psii-lhcii supercomplex from pisum sativum
Fadeeva, M. , Kandiah, E. , Klaiman, D. , Nelson, N.
Primary Citation of Related Structures: 9IFM
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 | A | 334 | Pisum Sativum | ENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein J | J | 35 | Pisum Sativum | GRIPLWIIGTVAGIVVIGLIGLFFYGSYSGLGSSL |
| Photosystem II reaction center protein K | K | 37 | Pisum Sativum | KLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVSFR |
| Photosystem II reaction center protein L | L | 36 | Pisum Sativum | QSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN |
| Photosystem II reaction center protein M | M | 33 | Pisum Sativum | MEVNILAFIATALFILVPTAFLLIIYVKTVSQS |
| Oxygen-evolving enhancer protein 1, chloroplastic | O | 248 | Pisum Sativum | EGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSADGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES |
| Oxygen-evolving enhancer protein 2, chloroplastic | P | 186 | Pisum Sativum | AYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA |
| Oxygen-evolving enhancer protein 3 | Q | 148 | Pisum Sativum | EAIPIKVGGPPPLSGGLPGTLNSDEARDLKLPLKERFFIQPLAPTEAAARTKESAKEIVAAKKFIDQKAWPFLQNDLRLRAGYLRYDLKTIISSKPKDQKQSLKELTDKLFQDISNLDHAAKIKSPSEAEKYYAIAVSTLNDVLSKIA |
| Chlorophyll a-b binding protein, chloroplastic | R | 224 | Pisum Sativum | RPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP |
| Chlorophyll a-b binding protein, chloroplastic | S | 218 | Pisum Sativum | ANEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQGYELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEVVLLGGAEYYRITNGLDLEDKFHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENFAKHLSDPFGNNLLTVIAG |
| Photosystem II reaction center protein T | T | 31 | Pisum Sativum | MEALVYTFLLVSTLGIIFFAIFFREPPKVPT |
| Photosystem II CP47 reaction center protein | B | 503 | Pisum Sativum | GLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAAAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGLFGPGIWVSDPYGLTGRVQSVNPAWGVDGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGGGLVENQSLSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVIVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTK |
| Photosystem II reaction center protein W | W | 54 | Pisum Sativum | LVDDRMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASGLDEDEESGLSL |
| Ultraviolet-B-repressible protein | X | 39 | Pisum Sativum | ATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKR |
| Chlorophyll a-b binding protein AB80, chloroplastic | Y | 219 | Pisum Sativum | GSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG |
| Photosystem II reaction center protein Z | Z | 61 | Pisum Sativum | MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLI |
| Photosystem II 5 kDa protein, chloroplastic | U | 28 | Pisum Sativum | EPKRGSPEAKKAYAPVCVTMPTARICRN |
| Photosystem II CP43 reaction center protein | C | 450 | Pisum Sativum | TGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGSFLLVFKAFYFGGIYDTWAPGGGDVRKITNFTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN |
| Photosystem II D2 protein | D | 352 | Pisum Sativum | TIALGKFTKDQNDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDLTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMATQDQPHENLIFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 75 | Pisum Sativum | RSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTETRQGIPLITGRFDSLEQLDEFSRS |
| Cytochrome b559 subunit beta | F | 30 | Pisum Sativum | FTVRWLAVHGLAVPTVFFLGSISAMQFIQR |
| Chlorophyll a-b binding protein 8, chloroplastic | G | 216 | Pisum Sativum | GSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNF |
| Chlorophyll a-b binding protein 8, chloroplastic | N | 216 | Pisum Sativum | GSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNF |
| Photosystem II reaction center protein H | H | 60 | Pisum Sativum | GPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGIAMALFAVFLSIILEIYNSSLLLDQISM |
| Photosystem II reaction center protein I | I | 34 | Pisum Sativum | MLTLKLFVYTIVIFFVSLFIFGFLSNDPGRNPGR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-02-18 Deposition Author(s): Fadeeva, M. , Kandiah, E. , Klaiman, D. , Nelson, N.