9I8V
Cryo-em structure of the danio rerio trna ligase complex
PDB DOI: 10.2210/pdb9i8v/pdb
Classification: LIGASE Organism(s): Danio Rerio
Deposited: 2025-02-06 Deposition Author(s): Chamera, S. , Chramiec-Glabik, A. , Czarnocki-Cieciura, M. , Glatt, S. , Golebiowski, F. , Jaciuk, M. , Jemielity, J. , Koziej, L. , Nowak, J. , Nowotny, M. , Smietanski, M. , Sroka, M. , Warminski, M. , Wycisk, K. , Zajko, W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.33 Å
Cryo-em structure of the danio rerio trna ligase complex
Chamera, S. , Chramiec-Glabik, A. , Czarnocki-Cieciura, M. , Glatt, S. , Golebiowski, F. , Jaciuk, M. , Jemielity, J. , Koziej, L. , Nowak, J. , Nowotny, M. , Smietanski, M. , Sroka, M. , Warminski, M. , Wycisk, K. , Zajko, W.
Primary Citation of Related Structures: 9I8V
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ATP-dependent RNA helicase | B | 48 | Danio Rerio | RRATGGGLYKGHVDILAPTVQELANLEREAQTSFLHLGYLPNQLFKAF |
| RNA-splicing ligase RtcB homolog | C | 519 | Danio Rerio | MHHHHHHENLYFQGMSRSYNDELQYLDKIHKNCWRIKKGFVPNMLVEGVFYVNDPLEKLMFEELRNACRGGGFGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMENPDAVVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDRITVNDRQLACARITSEEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVDGRQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG |
| Family with sequence similarity 98, member B | D | 296 | Danio Rerio | MESDILDILEQLGYDGPLAEEACLLAECGRGFSSSEYVNLLTWLTKQLTQFTETHTQDEIITADPLDVSRLLKDCCCPYEGLASRLANGDVKDTRDHLKIILFVSSELQSAQLLLSKTLRDAEEREMRSCSPLQDLSVICHTLTLPDPAGRDPTDTFTDIQTQVNVLLEKLPETHIGAPALQRSISAEQWEELEKINSTLSAEYECRRRMLIKRLDVTVQSFSWSDRAKVKIDQMARAYQPKRHSLSVRSSVSLAHLLAARRDICNMVKTSSGSSRQNTSCAVNRILMGRVPDRGG |
| RNA transcription, translation and transport factor protein | E | 242 | Danio Rerio | MFRRKLTALEYHNPTGFDCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIPSSDWPKYFEKYLQDVNCPFSVQERQETVDWLLGLAVRFEYGDNVEKYRNCKPVTETNDVQKSADPLINLDSNNPDFKAGVLALANLLKIQRHDDYLVMLKAIKILVQERLTPDAIAKASQAKEGLPVTLDKHILGFDTGDATLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR |
| Ashwin | F | 83 | Danio Rerio | MASHRTDRTKNPTSNGDVSKVDLLLHPELLSQEFIQLMLQERNIAVSDPEDRDRLTGLYLQHVIPLPQRELPRSRWGKRMEKS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-02-06 Deposition Author(s): Chamera, S. , Chramiec-Glabik, A. , Czarnocki-Cieciura, M. , Glatt, S. , Golebiowski, F. , Jaciuk, M. , Jemielity, J. , Koziej, L. , Nowak, J. , Nowotny, M. , Smietanski, M. , Sroka, M. , Warminski, M. , Wycisk, K. , Zajko, W.