9HDP
The human line-1 orf2p target-primed reverse transcription complex with the fingers domain in a closed conformation
PDB DOI: 10.2210/pdb9hdp/pdb
Classification: RNA BINDING PROTEIN Organism(s): Escherichia Coli (Strain K12) , Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct
Deposited: 2024-11-12 Deposition Author(s): Ghanim, G.E. , Hu, H. , Nguyen, T.H.D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.5 Å
The human line-1 orf2p target-primed reverse transcription complex with the fingers domain in a closed conformation
Ghanim, G.E. , Hu, H. , Nguyen, T.H.D.
Primary Citation of Related Structures: 9HDP
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| LINE-1 retrotransposable element ORF2 protein | A | 1797 | Escherichia Coli (Strain K12) , Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct | MVHHHHHHHHGGSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKGGSEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELVKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSNNNNNNNNNNLGSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGMTGSTSHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHIVGSKALLSKCKRTEIITNYLSDHSAIKLELRIKNLTQSRSTTWKLNNLLLNDYWVHNEMKAEIKMFFETNENKDTTYQNLWDAFKAVCRGKFIALNAYKRKQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEETNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVKPKTIKTLEENLGITIQDIGVGKDFMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPNEYKSCCYKDTCTRMFIAALFTIAKTWNQPKCPTMIDWIKKMWHIYTMEYYAAIKNDEFISFVGTWMKLETIILSKLSQEQKTKHRIFSLIGGN |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Target DNA strand 1 | b | 37 | NA | TTAGTTGCTGAATTATTGGAAGTTTTGTTTTTTTTTT |
| Target DNA strand 2 | c | 30 | NA | AAACAAAACTTCCAATAATTCAGCAACTAA |
| Template P(A)30 RNA | d | 30 | NA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Target DNA strand 3 | e | 26 | NA | TTTTTTTTTTTTTTTTTTTTTATAAA |
| Target DNA strand 4 | f | 19 | NA | AAAAAAAAAAAAAAAAAAA |
| Unassigned Nucleic Acid | g | 4 | NA | AAAA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-11-12 Deposition Author(s): Ghanim, G.E. , Hu, H. , Nguyen, T.H.D.