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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9GER

Native dimeric myeloperoxidase bound to nucleosome core particle, intermediate state; composite map

PDB DOI: 10.2210/pdb9ger/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Xenopus Laevis , Synthetic Construct

Deposited: 2024-08-07
Deposition Author(s): Burn, G.L. , Prumbaum, D. , Raisch, T. , Raunser, S. , Tacke, S. , Thee, S. , Winkler, M. , Zychlinsky, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.58 Å

Literature

Native dimeric myeloperoxidase bound to nucleosome core particle, intermediate state; composite map

Burn, G.L. , Prumbaum, D. , Raisch, T. , Raunser, S. , Tacke, S. , Thee, S. , Winkler, M. , Zychlinsky, A.

Primary Citation of Related Structures: 9GER


Proteins
Molecule Chains Sequence Length Organism Sequence
Myeloperoxidase light chain K 108 Homo Sapiens , Xenopus Laevis , Synthetic Construct VTCPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPAAR
Myeloperoxidase light chain M 108 Homo Sapiens , Xenopus Laevis , Synthetic Construct VTCPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPAAR
Myeloperoxidase light chain L 466 Homo Sapiens , Xenopus Laevis , Synthetic Construct VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA
Myeloperoxidase light chain N 466 Homo Sapiens , Xenopus Laevis , Synthetic Construct VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA
Histone H3.2 A 99 Homo Sapiens , Xenopus Laevis , Synthetic Construct KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 99 Homo Sapiens , Xenopus Laevis , Synthetic Construct KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 87 Homo Sapiens , Xenopus Laevis , Synthetic Construct KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 87 Homo Sapiens , Xenopus Laevis , Synthetic Construct KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 111 Homo Sapiens , Xenopus Laevis , Synthetic Construct TRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT
Histone H2A type 1 G 111 Homo Sapiens , Xenopus Laevis , Synthetic Construct TRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT
Histone H2B 1.1 D 96 Homo Sapiens , Xenopus Laevis , Synthetic Construct RRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Histone H2B 1.1 H 96 Homo Sapiens , Xenopus Laevis , Synthetic Construct RRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Widom-601 DNA (145-MER) i 147 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGAT
Widom-601 DNA (145-MER) j 147 NA ATCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-07
Deposition Author(s): Burn, G.L. , Prumbaum, D. , Raisch, T. , Raunser, S. , Tacke, S. , Thee, S. , Winkler, M. , Zychlinsky, A.