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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9GB2

Extended phicd508 baseplate

PDB DOI: 10.2210/pdb9gb2/pdb

Classification: VIRUS
Organism(s): Clostridioides Difficile

Deposited: 2024-07-29
Deposition Author(s): Bullough, P.A. , Fagan, R.P. , Wilson, J.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.43 Å

9gb2
Literature

Extended phicd508 baseplate

Bullough, P.A. , Fagan, R.P. , Wilson, J.S.

Primary Citation of Related Structures: 9GB2


Proteins
Molecule Chains Sequence Length Organism Sequence
gp56 - Tail tube protein A 137 Clostridioides Difficile MYNDDYIEEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
gp56 - Tail tube protein B 137 Clostridioides Difficile MYNDDYIEEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
gp56 - Tail tube protein C 137 Clostridioides Difficile MYNDDYIEEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
gp56 - Tail tube protein D 137 Clostridioides Difficile MYNDDYIEEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
gp55 - Tail sheath protein E 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp55 - Tail sheath protein F 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp55 - Tail sheath protein G 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp55 - Tail sheath protein H 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp55 - Tail sheath protein I 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp55 - Tail sheath protein J 473 Clostridioides Difficile MATGTWNEKERKEIPGFYNRFKTQAEKSTNTGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYLG
gp64 - Sheath initiator K 152 Clostridioides Difficile MPNLFPQSETFETVELKNNDENELDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDGNIKR
gp64 - Sheath initiator L 152 Clostridioides Difficile MPNLFPQSETFETVELKNNDENELDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDGNIKR
gp64 - Sheath initiator M 152 Clostridioides Difficile MPNLFPQSETFETVELKNNDENELDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDGNIKR
gp64 - Sheath initiator N 152 Clostridioides Difficile MPNLFPQSETFETVELKNNDENELDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDGNIKR
gp64 - Sheath initiator O 152 Clostridioides Difficile MPNLFPQSETFETVELKNNDENELDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDGNIKR
gp64 - Sheath initiator P 152 Clostridioides Difficile MPNLFPQSETFETVELKNNDENELDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDGNIKR
gp66 - Triplex 2 protein Q 209 Clostridioides Difficile MIASKKGKEMLLTLSPIYEQSIIMQSLYEAIGSEFDNLELLDEEIELQLFPQSATWGLGFWENRVGLITNLDEDMETRRRKVIAKLQSKYIMTPKRMSMILQSYTGANIKINENISPYTFGVELTSTQGFPKDLEDLYKRVNVIKPSHLAVSYKLVSLLKSKTYFAQTAIMSEEITIYPYTSKEVKASVKAKFALAHNMSSETLTVYPR
gp66 - Triplex 2 protein R 209 Clostridioides Difficile MIASKKGKEMLLTLSPIYEQSIIMQSLYEAIGSEFDNLELLDEEIELQLFPQSATWGLGFWENRVGLITNLDEDMETRRRKVIAKLQSKYIMTPKRMSMILQSYTGANIKINENISPYTFGVELTSTQGFPKDLEDLYKRVNVIKPSHLAVSYKLVSLLKSKTYFAQTAIMSEEITIYPYTSKEVKASVKAKFALAHNMSSETLTVYPR
gp61 - Tail tube initiator S 223 Clostridioides Difficile MVIDIYLKNEKEKIDFHFPVNPQDSLSIKKEKRFETVDIVNLGEFDIKKEGEKIREISFKTFLPNLYDASYCRYSELKNPIEVVAMLEKWVDQAEPLRLIITGFGYNGLVTISSFSNTQTAGREEDRDIEITFRTYRELKIETLKKDTKSNTKTDLKDNRPNTQTKSKIYTVKASDTLYKIAKNLLGKGSRWPEIYNIPENKKVIGKNPNIIKKGQKLVIPSK
gp61 - Tail tube initiator T 223 Clostridioides Difficile MVIDIYLKNEKEKIDFHFPVNPQDSLSIKKEKRFETVDIVNLGEFDIKKEGEKIREISFKTFLPNLYDASYCRYSELKNPIEVVAMLEKWVDQAEPLRLIITGFGYNGLVTISSFSNTQTAGREEDRDIEITFRTYRELKIETLKKDTKSNTKTDLKDNRPNTQTKSKIYTVKASDTLYKIAKNLLGKGSRWPEIYNIPENKKVIGKNPNIIKKGQKLVIPSK
gp61 - Tail tube initiator U 223 Clostridioides Difficile MVIDIYLKNEKEKIDFHFPVNPQDSLSIKKEKRFETVDIVNLGEFDIKKEGEKIREISFKTFLPNLYDASYCRYSELKNPIEVVAMLEKWVDQAEPLRLIITGFGYNGLVTISSFSNTQTAGREEDRDIEITFRTYRELKIETLKKDTKSNTKTDLKDNRPNTQTKSKIYTVKASDTLYKIAKNLLGKGSRWPEIYNIPENKKVIGKNPNIIKKGQKLVIPSK
gp61 - Tail tube initiator V 223 Clostridioides Difficile MVIDIYLKNEKEKIDFHFPVNPQDSLSIKKEKRFETVDIVNLGEFDIKKEGEKIREISFKTFLPNLYDASYCRYSELKNPIEVVAMLEKWVDQAEPLRLIITGFGYNGLVTISSFSNTQTAGREEDRDIEITFRTYRELKIETLKKDTKSNTKTDLKDNRPNTQTKSKIYTVKASDTLYKIAKNLLGKGSRWPEIYNIPENKKVIGKNPNIIKKGQKLVIPSK
gp61 - Tail tube initiator W 223 Clostridioides Difficile MVIDIYLKNEKEKIDFHFPVNPQDSLSIKKEKRFETVDIVNLGEFDIKKEGEKIREISFKTFLPNLYDASYCRYSELKNPIEVVAMLEKWVDQAEPLRLIITGFGYNGLVTISSFSNTQTAGREEDRDIEITFRTYRELKIETLKKDTKSNTKTDLKDNRPNTQTKSKIYTVKASDTLYKIAKNLLGKGSRWPEIYNIPENKKVIGKNPNIIKKGQKLVIPSK
gp61 - Tail tube initiator X 223 Clostridioides Difficile MVIDIYLKNEKEKIDFHFPVNPQDSLSIKKEKRFETVDIVNLGEFDIKKEGEKIREISFKTFLPNLYDASYCRYSELKNPIEVVAMLEKWVDQAEPLRLIITGFGYNGLVTISSFSNTQTAGREEDRDIEITFRTYRELKIETLKKDTKSNTKTDLKDNRPNTQTKSKIYTVKASDTLYKIAKNLLGKGSRWPEIYNIPENKKVIGKNPNIIKKGQKLVIPSK
gp56 - Tail tube protein Y 137 Clostridioides Difficile MYNDDYIEEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
gp56 - Tail tube protein Z 137 Clostridioides Difficile MYNDDYIEEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-29
Deposition Author(s): Bullough, P.A. , Fagan, R.P. , Wilson, J.S.