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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9G8S

C3 reconstruction of extended phicd508 needle

PDB DOI: 10.2210/pdb9g8s/pdb

Classification: VIRUS
Organism(s): Clostridioides Phage Phicd508

Deposited: 2024-07-23
Deposition Author(s): Bullough, P.A. , Fagan, R.P. , Wilson, J.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.96 Å

9g8s
Literature

C3 reconstruction of extended phicd508 needle

Bullough, P.A. , Fagan, R.P. , Wilson, J.S.

Primary Citation of Related Structures: 9G8S


Proteins
Molecule Chains Sequence Length Organism Sequence
XkdM-related protein C 130 Clostridioides Phage Phicd508 EEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
Tail sheath G 460 Clostridioides Phage Phicd508 EIPGFYNRFKAQAEKAAATGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYL
XkdM-related protein A 130 Clostridioides Phage Phicd508 EEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
Tail sheath H 460 Clostridioides Phage Phicd508 EIPGFYNRFKAQAEKAAATGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYL
XkdM-related protein B 130 Clostridioides Phage Phicd508 EEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
Tail sheath I 460 Clostridioides Phage Phicd508 EIPGFYNRFKAQAEKAAATGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYL
XkdM-related protein D 130 Clostridioides Phage Phicd508 EEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
Tail sheath J 460 Clostridioides Phage Phicd508 EIPGFYNRFKAQAEKAAATGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYL
Tail sheath E 460 Clostridioides Phage Phicd508 EIPGFYNRFKAQAEKAAATGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYL
XkdS-related protein K 125 Clostridioides Phage Phicd508 LDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDG
Tail sheath F 460 Clostridioides Phage Phicd508 EIPGFYNRFKAQAEKAAATGLKGRLAMPIRANWGDVGKVVTIKNDLRQLKNLFGDDMNYSAFKLGKLALLGNVKELLLYRLVDGNQKKGTLTLKDTTENSAKDVIKLETKYPTARNFNVTIKSNLVDSDKKDFIFFENTKQLFSSSIKGTIDEIVLEINSNLDNEYVIATKVADSDTILANVVNQALEGGNDGCTSITNESYLKALEEFERYSFDSFVLDGVADEALQETTKAWVAKNKELGKDILLFLGGKTEDNIKQINDKSKSFNDENIVNVGSSAYYENIKYTPSEVAVYIAALSVSKGITGSICNAKTIFEEVEPRLSQSEVKECLKSGTLVLDFDDGDVIIVDDVNTFKKYVDDKNEAMGYISNIMFINTINKDTSLKRKEFVGKIFNDATGQTTVICALKKYFEELMSQGIISEFNVDIDTELQATAKADEFYWKWDAVKVDVMKKIYGTGYL
XkdS-related protein L 125 Clostridioides Phage Phicd508 LDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDG
XkdS-related protein N 125 Clostridioides Phage Phicd508 LDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDG
XkdS-related protein M 125 Clostridioides Phage Phicd508 LDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDG
XkdS-related protein O 125 Clostridioides Phage Phicd508 LDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDG
XkdS-related protein P 125 Clostridioides Phage Phicd508 LDLKGSFLFDFEKGEFVKNADGTLKKCDKVQAYKQWCQKAILTPRYKKAAYTNIYGSEIKDLIASNLSQSAKELEITRLIKETILVHPYTKEVGEFSFNWLENSRLVEYEFDVLTIDDENIVIDG
XkdQ-related protein Q 316 Clostridioides Phage Phicd508 KIILNGKYDIANFNEGITLSEAIDGVAYKMDVSLVEPKQLKDINIKKGDKIILIDIAYESKKEETIFDGVVWETRRSEKSKKLTLSCRERTVYMEESEEQYQFKENTATQRIEYYCKQWNIPYYNLANTGKKLAKVIHKTNILDMIKKDLKETATKGGDLFRVRMDNKLKLFKLGTNANVYKLDSILEDANFTSSFNDAVTSVKVLGKSKDENTKAPIIGTYKKDADKFGTLQKIKQDEKIKNAKEAKKAAEAMFNSGEETISVDCAVDINRIRAGDKVSLKSKEYYVIDVTHTLDSRPKMKLNIGSLEYIRRKFY
Phage protein R 112 Clostridioides Phage Phicd508 FNGIARILKENMNKSVANGTFGMGCELAEITANGLKVNGYKDEIQDYLVLENLTLKEDYFTFSDEALSGEYRHKHKIETPKELKPLRIGDNVLVAVMGAEFVVIGRVVNAKP
XkdQ-related protein T 316 Clostridioides Phage Phicd508 KIILNGKYDIANFNEGITLSEAIDGVAYKMDVSLVEPKQLKDINIKKGDKIILIDIAYESKKEETIFDGVVWETRRSEKSKKLTLSCRERTVYMEESEEQYQFKENTATQRIEYYCKQWNIPYYNLANTGKKLAKVIHKTNILDMIKKDLKETATKGGDLFRVRMDNKLKLFKLGTNANVYKLDSILEDANFTSSFNDAVTSVKVLGKSKDENTKAPIIGTYKKDADKFGTLQKIKQDEKIKNAKEAKKAAEAMFNSGEETISVDCAVDINRIRAGDKVSLKSKEYYVIDVTHTLDSRPKMKLNIGSLEYIRRKFY
Phage protein S 112 Clostridioides Phage Phicd508 FNGIARILKENMNKSVANGTFGMGCELAEITANGLKVNGYKDEIQDYLVLENLTLKEDYFTFSDEALSGEYRHKHKIETPKELKPLRIGDNVLVAVMGAEFVVIGRVVNAKP
XkdQ-related protein U 316 Clostridioides Phage Phicd508 KIILNGKYDIANFNEGITLSEAIDGVAYKMDVSLVEPKQLKDINIKKGDKIILIDIAYESKKEETIFDGVVWETRRSEKSKKLTLSCRERTVYMEESEEQYQFKENTATQRIEYYCKQWNIPYYNLANTGKKLAKVIHKTNILDMIKKDLKETATKGGDLFRVRMDNKLKLFKLGTNANVYKLDSILEDANFTSSFNDAVTSVKVLGKSKDENTKAPIIGTYKKDADKFGTLQKIKQDEKIKNAKEAKKAAEAMFNSGEETISVDCAVDINRIRAGDKVSLKSKEYYVIDVTHTLDSRPKMKLNIGSLEYIRRKFY
Phage protein V 112 Clostridioides Phage Phicd508 FNGIARILKENMNKSVANGTFGMGCELAEITANGLKVNGYKDEIQDYLVLENLTLKEDYFTFSDEALSGEYRHKHKIETPKELKPLRIGDNVLVAVMGAEFVVIGRVVNAKP
Tail tape measure W 1424 Clostridioides Phage Phicd508 MREIAKKEMYHIDVVISAKGDGETKSKLSAMEKYMKQTEKRMQTLNRIKVNPAIKATDKASSVVNRVNNNMNKAKKTVTARIKATDNASPVANRASNNVNKAKKTVTARLKATDNASSTVNKVNNKIKEVAKPVPPVIIRGQDESSSIIDKVKAKIQNLKADTIIKIKSQADEAINTISRTKNKLQEFVSKRYEAAVKIRDEASSALRGLTGKIDSFVSGAISKFARLATTAGALIGGIGVGSAVKGFATFEQSMKNTQAVSGATGKEMEALTAKARQLGRETSFTAKDAGDAMYYMGMAGWKSEQMIKAIPDVLNLAAAGGTDLALTSDIVTDGLTALGMTANDTTEFVDVMAATITNSNTSVELMGETFKYVGSMGGALGVSMKDLSLATGLMASASVKGSMAGTSLRGGLVRLIKPPEEAASAIKKYGIELKKNKNGSLDLAGTIGSLREKLGGLKDVEKGVAISSIFGRTAMAGWAAVVNASESDFNKLTTAIAESEGEAKRIADMKLDTLSGQFEILKSAIDDVRISVGQRLGPMTRGFVEDLIKKMPQIGDAIVGVVEKFVNNFDKIKAGFQVLLPAIGSVIASVMVLKATFAFGGAIKSLSLLASTFGTAKLVAFGLTVGIGAIVIAFAGMTVAISNNKTAMMDLQTRFGSFGEYVTTIMETVGGVIKLTLGNLLIMLGGIGKGIGILLSDKSWDEKASSLKNLFGKTTAEIKTNTKEALSDINGETSNATALLKKSTSKELQGVTKAFSTAFDQSKNVTEKKSSDIARALTNGLKGLDDQSLTMMRGLNDNMAIILSGVTADMKPSDKVNKITKNLDDAFKAGKLSAQEYRSSIQETLNFISKYSADSSNNLKQGMSDAFNAFKEGTNIGGLKDGVTGMLNSLKATGPQALETLKGLGGKASEIFKGVDFNSSIDAQKTKVLQNLNSLGLEGTQAIDTLRTIFSQASSALDTTNLKQGLSNTFNSFKEGFNSGGIKNAINSMLGTINQAGPQMQQALGKMDGKMGQVFANVDFSTPIETQASKVLENLNNLGIEGPKALETVRSIFAQASSQIQGSASQTAQQANQEVANALTQGNPAVQQAGQQLGTDLTNGVVNGVQAGVPVVQQKSNELATATQNGVTNAVNSATPQIDNSNLTSGIDTAFNQATATVQQGASSMYNGAKQSFTQLAQIGREAGSSLYNGATTSFNMLATNVRVACSSMYNGARTSFTSLSSSAISAISAMCSSVVSQVSAMSSQIISYWNSVRATVSAPITASFNVKTTQTTVKRTVNESSGGILGNILDRFADGGVATRTSICGENGAEMVIPLTNTRRSRAIELYEQTGKMLGLGSTPSQKVGNSNIVNNVRQFPLANVLDTDNKEYKEATPNSVNSSNNTINLGGISINVQNSDNKEEMIQELLSQVESGIREALQDIG
Tail tape measure X 1424 Clostridioides Phage Phicd508 MREIAKKEMYHIDVVISAKGDGETKSKLSAMEKYMKQTEKRMQTLNRIKVNPAIKATDKASSVVNRVNNNMNKAKKTVTARIKATDNASPVANRASNNVNKAKKTVTARLKATDNASSTVNKVNNKIKEVAKPVPPVIIRGQDESSSIIDKVKAKIQNLKADTIIKIKSQADEAINTISRTKNKLQEFVSKRYEAAVKIRDEASSALRGLTGKIDSFVSGAISKFARLATTAGALIGGIGVGSAVKGFATFEQSMKNTQAVSGATGKEMEALTAKARQLGRETSFTAKDAGDAMYYMGMAGWKSEQMIKAIPDVLNLAAAGGTDLALTSDIVTDGLTALGMTANDTTEFVDVMAATITNSNTSVELMGETFKYVGSMGGALGVSMKDLSLATGLMASASVKGSMAGTSLRGGLVRLIKPPEEAASAIKKYGIELKKNKNGSLDLAGTIGSLREKLGGLKDVEKGVAISSIFGRTAMAGWAAVVNASESDFNKLTTAIAESEGEAKRIADMKLDTLSGQFEILKSAIDDVRISVGQRLGPMTRGFVEDLIKKMPQIGDAIVGVVEKFVNNFDKIKAGFQVLLPAIGSVIASVMVLKATFAFGGAIKSLSLLASTFGTAKLVAFGLTVGIGAIVIAFAGMTVAISNNKTAMMDLQTRFGSFGEYVTTIMETVGGVIKLTLGNLLIMLGGIGKGIGILLSDKSWDEKASSLKNLFGKTTAEIKTNTKEALSDINGETSNATALLKKSTSKELQGVTKAFSTAFDQSKNVTEKKSSDIARALTNGLKGLDDQSLTMMRGLNDNMAIILSGVTADMKPSDKVNKITKNLDDAFKAGKLSAQEYRSSIQETLNFISKYSADSSNNLKQGMSDAFNAFKEGTNIGGLKDGVTGMLNSLKATGPQALETLKGLGGKASEIFKGVDFNSSIDAQKTKVLQNLNSLGLEGTQAIDTLRTIFSQASSALDTTNLKQGLSNTFNSFKEGFNSGGIKNAINSMLGTINQAGPQMQQALGKMDGKMGQVFANVDFSTPIETQASKVLENLNNLGIEGPKALETVRSIFAQASSQIQGSASQTAQQANQEVANALTQGNPAVQQAGQQLGTDLTNGVVNGVQAGVPVVQQKSNELATATQNGVTNAVNSATPQIDNSNLTSGIDTAFNQATATVQQGASSMYNGAKQSFTQLAQIGREAGSSLYNGATTSFNMLATNVRVACSSMYNGARTSFTSLSSSAISAISAMCSSVVSQVSAMSSQIISYWNSVRATVSAPITASFNVKTTQTTVKRTVNESSGGILGNILDRFADGGVATRTSICGENGAEMVIPLTNTRRSRAIELYEQTGKMLGLGSTPSQKVGNSNIVNNVRQFPLANVLDTDNKEYKEATPNSVNSSNNTINLGGISINVQNSDNKEEMIQELLSQVESGIREALQDIG
XkdM-related protein Z 130 Clostridioides Phage Phicd508 EEASFLNGSDVVILIDGVEELYMEEIKADFEQDEQSIKLLGCQNEISRVGTTKGSFSLNGYKTDSKFAKLGFRSFEIIYNLSNSETLGYESIRLKNCRLKKLPLINSKAGEIVKIEVEGSFRGYDLLNEL
Tail tape measure Y 1424 Clostridioides Phage Phicd508 MREIAKKEMYHIDVVISAKGDGETKSKLSAMEKYMKQTEKRMQTLNRIKVNPAIKATDKASSVVNRVNNNMNKAKKTVTARIKATDNASPVANRASNNVNKAKKTVTARLKATDNASSTVNKVNNKIKEVAKPVPPVIIRGQDESSSIIDKVKAKIQNLKADTIIKIKSQADEAINTISRTKNKLQEFVSKRYEAAVKIRDEASSALRGLTGKIDSFVSGAISKFARLATTAGALIGGIGVGSAVKGFATFEQSMKNTQAVSGATGKEMEALTAKARQLGRETSFTAKDAGDAMYYMGMAGWKSEQMIKAIPDVLNLAAAGGTDLALTSDIVTDGLTALGMTANDTTEFVDVMAATITNSNTSVELMGETFKYVGSMGGALGVSMKDLSLATGLMASASVKGSMAGTSLRGGLVRLIKPPEEAASAIKKYGIELKKNKNGSLDLAGTIGSLREKLGGLKDVEKGVAISSIFGRTAMAGWAAVVNASESDFNKLTTAIAESEGEAKRIADMKLDTLSGQFEILKSAIDDVRISVGQRLGPMTRGFVEDLIKKMPQIGDAIVGVVEKFVNNFDKIKAGFQVLLPAIGSVIASVMVLKATFAFGGAIKSLSLLASTFGTAKLVAFGLTVGIGAIVIAFAGMTVAISNNKTAMMDLQTRFGSFGEYVTTIMETVGGVIKLTLGNLLIMLGGIGKGIGILLSDKSWDEKASSLKNLFGKTTAEIKTNTKEALSDINGETSNATALLKKSTSKELQGVTKAFSTAFDQSKNVTEKKSSDIARALTNGLKGLDDQSLTMMRGLNDNMAIILSGVTADMKPSDKVNKITKNLDDAFKAGKLSAQEYRSSIQETLNFISKYSADSSNNLKQGMSDAFNAFKEGTNIGGLKDGVTGMLNSLKATGPQALETLKGLGGKASEIFKGVDFNSSIDAQKTKVLQNLNSLGLEGTQAIDTLRTIFSQASSALDTTNLKQGLSNTFNSFKEGFNSGGIKNAINSMLGTINQAGPQMQQALGKMDGKMGQVFANVDFSTPIETQASKVLENLNNLGIEGPKALETVRSIFAQASSQIQGSASQTAQQANQEVANALTQGNPAVQQAGQQLGTDLTNGVVNGVQAGVPVVQQKSNELATATQNGVTNAVNSATPQIDNSNLTSGIDTAFNQATATVQQGASSMYNGAKQSFTQLAQIGREAGSSLYNGATTSFNMLATNVRVACSSMYNGARTSFTSLSSSAISAISAMCSSVVSQVSAMSSQIISYWNSVRATVSAPITASFNVKTTQTTVKRTVNESSGGILGNILDRFADGGVATRTSICGENGAEMVIPLTNTRRSRAIELYEQTGKMLGLGSTPSQKVGNSNIVNNVRQFPLANVLDTDNKEYKEATPNSVNSSNNTINLGGISINVQNSDNKEEMIQELLSQVESGIREALQDIG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-23
Deposition Author(s): Bullough, P.A. , Fagan, R.P. , Wilson, J.S.