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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9FZL

Perkinsus marinus respiratory supercomplex cii2ciii2civ2 in an intermediate state

PDB DOI: 10.2210/pdb9fzl/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Perkinsus Marinus

Deposited: 2024-07-05
Deposition Author(s): Amunts, A. , Wu, F.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.2 Å

9fzl
Literature

Perkinsus marinus respiratory supercomplex cii2ciii2civ2 in an intermediate state

Amunts, A. , Wu, F.

Primary Citation of Related Structures: 9FZL


Proteins
Molecule Chains Sequence Length Organism Sequence
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 2M 604 Perkinsus Marinus AAGSGTRYAVHDHFYDAVVVGAGGAGLRAASGLVAHGLKTACISKVFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIEHMCRLAPQVVLELESYGLPFSRTKEGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAILHTLYGMSLKYDCLFFIEYFALDLIMDQDGSCKGVIAMSMEDGSIHRFGAHQTVIATGGYGRAYQSCTSAHTCTGDGGGMVSRAGLPLQDLEFVQFHPTGIFPAGCLMTEGCRGEGGILRNSEGEPFMARYAPTAKDLASRDVVSRAMTLEIREGRGVGPNKDHIYLHLDHLPAETLRERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKAQCLNPTSSDPNKIVPGLLAAGEAGSASVHGANRLGANSLLDLVVFGRTAADTVAEIVKPNSPPVTLPKDAGGGTIDRFDKIRHAKGPVSTADLRSKLQRTMQTRAPVYRNGDDLKKGCEEVREIMKEYKDVGIKDRTLVWNTDLIETLELENLITQAAQTIVSGEARKESRGAHAREDFTERDDKKWMKHSLSYQTKPHVEESDIVLKYRPVVDQPLDSEMHHVPPAKRVY
SDHI 2V 87 Perkinsus Marinus MMLRYDSLLWQCTLAAGIWFIPQDVAAISAFLLYGRSKSRTINQPVYVDNIDTAANEYFKRKGLDPTKMIMMRKSSKITEIRYGEMY
Mitochondrial processing peptidase beta subunit 3A 454 Perkinsus Marinus YYWGSTVTTEMHNVSPTQVTRLPNGMRVATQFSYTDSATVGLWIDAGARYETKESNGTAHFLERVLYLGTKNRSRDQLETEVENLGANLNSYTGREQTAFYAKTTKDGILPCIDILADCILNPKLDGDEIEKERVRITQDLQAVNQSYEELLYDKVHTACYRDCSLGQTVIGPEENVATIKRDHMVNYLYNNFTADRMVLVAVGPVDHAQIVKEAEKKFANIRPTAGPRMLEEKPYFCASELVYRNDDMGPTAHIAIAYEGVPWRSPDYITFMLMNAIIGSYDKKNEGLVPGLQSANRITQTGATRMDVGCFDYYTGFNIAYKDTGLFGFYIATDEVAVEHAVGDLMFGVTSFSYSLTEEEVMKAKRELKTNFFSGLDNTTGVAEDIGRQILAYGRRLSPAEFVERLDQIDSQEVQRVAWNRLHDAEITMTGVGPLHGLLQLWDLRRQTWWWRY
Alpha-MPP 3B 496 Perkinsus Marinus GKSTIQGTSYNVVKFQQEDVSEVVKEVPHFQFYYIGGEHKDNKYRDVPLDIPVLTEAPPPQLKKPEMKFSVLENGMRIVSVDKQGLTSNLGLFVHAGSRFETPAEEGLSHMVECVAFRSTAHLSHLRTIKTIEVLGMNGGCQAGREHIMYNLELLREYMPVASTLVVGNVLFPRLLPWEVNACHKEIKKAHERLKADTDQYVSELLHQTAYHNNTLGNALLANEGRALEHFTGDNIREFMMKHFSAERSVFVGINVDHDELCKWLMRSFAEYVAIPNLPRDEAKPVYTGGYKLEENADMPVCNIAIGFETEGWNSADLVPVTVLQTLLGGGGSFSTGGPGKGMHSRLYLNVLNQNPNVESCMAFNTQYSDSGLFGMYITGFGQEAPRLVDIALNELRKLDSFTPDEVSRAKNTLKGNIFMNAENSKVLMEDIGRQIIMSGKVVTPEEFAARVDAVTEADLKKVAAKLLRKNPTYVVYGDTKSAPHYEYVRTALASL
Iso-1-cytochrome c 3C 241 Perkinsus Marinus KDPPSPPDWPFWFKAFSHCHDIPSCRRGYEVYRQVCATCHAARFVCFRHMVNTIYPENRVKQLAASFDYEDGPNDRGEMFTRPGNLLDPFPSPYPNEEAARFANQGASPPDLSQQAAAHHGGCDYIMSLLTGYRDPPAGVSLRSGLYYNTYFPGGAISMPPPLNDGAIEYEDGTPAVASQMAKDVSQFLTWAQDPQHDERKLIGLKMSTAALVWLFSISVWNRHVWTMIKTRRIDFTKTVY
QCR8 3D 95 Perkinsus Marinus PNTKRDIRRLGSYPVPPESKNFWRGRFQVPGGQIQQGVSPMQQKIFFQWWWNLPTRYFWRFTKWSDFLIPSLMWYTGFLMCKNDVEEGTRSRYWY
QCR9 3E 92 Perkinsus Marinus SGFGTSYAHDPKWIEDWMARKRVGVDRMDWFFRAFNRLRLYELFFKSTPRFYAFMVIGGLLGSYYWSRFWEQYWIRVNKGRLYKDVPYVYPP
QCR10 3F 84 Perkinsus Marinus TLAVYHRLWGMTEQFAARKKWGWRQVYHRMLPFQIALYPSLMWYLFGWFDDPYKEAMTLGIWNVSKRSLYFWDPLRSGGDKGWY
Cytochrome b 3G 354 Perkinsus Marinus FILIIKDNIILYNINDSINYLWNIGYIIMVVMIVQVITGIIINLYMNINNGYKGIIYIIKEIYYGYILRYIHNNNSTLIYVVVYLHIIRNLYYKTYYYNILIWYSGMIMLYQLIIIGFIGYILGWGQLSYWGITVIINLISGIPYLILLISGNYYITIVTIKRLYIVHFILPIILIYVEIIHVYYIHYLINNNIVEYNVNNKIIFNNYILVKDNNGIIFILNIFILELNNNIFIIADNDNLIEINILVTPIHIIPEWYYLYWYSILKLLPNKYSGLYIVVNSISIINILSEYKIVISEYKNYKNIIWYNQIIQYISMIYIGIQLPIIEYINYGRYIIIFNILLLIMYLYPKKKK
Ubiquinol-cytochrome c reductase, iron-sulfur subunit, putative 3H 326 Perkinsus Marinus HRPTTVKMIDSWRTEPSSEKPMWYNRFDQVDHISQHPDPEKTEKYPPVDDTRKLMKTRGDPHIMRGWGEYVYCHYEHLREPVFPRKPDVAKGELAAGANVTRTDVWKREGEPAIQSIARFNPDNFRPVGYAENIPCPDTCVPEGHLDFRHTRLPTWHADRRPFHYFATGMFGLIGLAFLRGTVVKVVHGLWPARDAIAAGVIEVDLRGIQPGQNFVVKWRGKPVFVRRRTQAMIDAATADDAIVNSLRDPERDKDRVKKPEWLVMLGVCTHLGCVPYPDQGLYGGYFCPCHGSHYDHSGRIRLGPAPLNMEIPTYEFTDDDTIILG
Ubiquinol-cytochrome C reductase complex 14kD subunit, putative 3I 176 Perkinsus Marinus SFHRAFARVVCNYNKSIEGSVPWYQVKREKSPFQQVWDEVFTPIWFKLVKGPYERWEYNALVARYRGMGIMADDAMNDKDMIVERALDIIPEDIRIQRYRRMMRGAVLAGRKLHLPLELQNYDPMVPYMAPYIEEAKFQMQEEQELLAYHPWDRRLYTAGVSGFGETSMHSTFLTM
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial 2N 259 Perkinsus Marinus MQTFRVYRYDPLLQDKPHMQEFNIDLAQCGPMILDALIKIKATQDSTLAFRRSCREGICGSCAMNINGKNGLACLQYIEPGAAPIDIQPLPHTYVLKDLVPDLSNFYNQYKSIEPFLKRRRAKQPGEKEYYQSIEDREKLDGMYECNLCACCMTSCPSYWWNPEYYLGPAVLLQAYRWIADSRDEFTTERMAWINDSMRLYRCHGIMNCTSCCPKGLDPAKAIAKMKAAIAAAYEPGWTKIVAQESIANKKRESGMMYA
Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative 3J 92 Perkinsus Marinus ARAYCGRFAFMLDYPKSYHPPRKNEDGDYVDPRTDMLPKCAAECSEWLTEYNACVQRIKMRTDGRGNCQGQYEEFAMCQDHCIAHELFHYLK
Cu-binding protein 3K 79 Perkinsus Marinus PPIQKPLLPSGRAVLKHGRSMLCSGNLSYDVNSTIKAPECKRGMGFTQFKRFTPVPIESGVSVGNRGWFFPGVIPYQGH
Aurora kinase 3L 69 Perkinsus Marinus IGPPLRTAQIGPTVGGNGGRTFVLYLTTTINVLIAFQVSWACYLQPRWRSFRSDMLEKFPSLQPDMDEK
Cytochrome c oxidase subunit 3 40 230 Perkinsus Marinus FELNINIINYNYLGIIITVIISIYIYNNSNIISVYNSNLLLININIWMKYNILDMLNLNVLDYKILLWIVVIIISNEILLFVSFYWIYYHNYINYYHVNILILNSYNIVYNNIILLTLLSTIVNIKFYNYILSYYKYILSYLIYYNNYMFNNKIILEYKNNSNYTNDSVYMTSYFYIILLHYIHIYDSIILIVVYNYVNYKNINNYYININIYYHLIEVLYIVISILLYL
Cytochrome c oxidase subunit 3 41 230 Perkinsus Marinus FELNINIINYNYLGIIITVIISIYIYNNSNIISVYNSNLLLININIWMKYNILDMLNLNVLDYKILLWIVVIIISNEILLFVSFYWIYYHNYINYYHVNILILNSYNIVYNNIILLTLLSTIVNIKFYNYILSYYKYILSYLIYYNNYMFNNKIILEYKNNSNYTNDSVYMTSYFYIILLHYIHIYDSIILIVVYNYVNYKNINNYYININIYYHLIEVLYIVISILLYL
Cytochrome c oxidase subunit 6B 4A 100 Perkinsus Marinus ESADALFVGTLDRLTAEHPHTDDPRFAFQSNQWNNCELRFTQFCRCTRELGEDDPRCKYQYYRAQTVCHEFLLEDWMEHRHRGTCDLDIMPDRQVIHMRG
Peptidase M14 carboxypeptidase A domain-containing protein 4B 93 Perkinsus Marinus GSIEQFINLRTARMFIYGGVSAVFLYKATPVMYRWEMLPTFLVKTEAYKAREAMIAFDNMKGIVYGPYDKGGLEGPPTKIPETSVGMMKVDPM
Cytochrome c oxidase subunit 40 4C 75 Perkinsus Marinus YKTENPLYKDDEPFAKTCHTFDYTREGTEKNGLGYYCLMGLWASIFIWDSLYTGATMPTGVHRYVWGPYFPTAWF
Cytochrome c oxidase subunit 34 4D 90 Perkinsus Marinus SIFTPMDWMFYYFPNYSRDKVALMARQIKIHFAIGFALVFLVYHPPYKGADYGNFHKSPLYWYKYNQLERSGQLQENLRIKRDWFYDEDP
Merozoite surface protein, putative 4E 152 Perkinsus Marinus ISTSETLNQKILRWLDVTGMLTRWHSRREFILDMDPYFRKNSGMWTEWERKTLLFLFYCCTLATPYSAYLDLQELKHQGTKPPRPVSLESRFMNQRRYDFTWMHPQDKFCSECRPVELECKKMCFDRYRSMDYRMYGFQRPRIQTYYSFSTC
Ubiquitin, putative 4F 73 Perkinsus Marinus HIPHPVKYVGPRRYGRYVYGMNRPPVLRQVKDWIDWTGWNSVFGGFSFQVAFGLMIVSGVYLNNYRATHTLYY
SDHG 2O 160 Perkinsus Marinus KASTLATGKGIPGIDPKLPTHTPPASYDVLSSGKARPVQVAKWPPMPGGVPLPKGGIGGVWRGAFEVASAYTALNLERQRFANIIRLGTFCRVVIWPVIPLVGLFHYIRQRDRDWYALELLRSRCKSEDCAAFYDWTMPGSSGHWRMQNDLEIIRRAANV
Cytochrome c oxidase subunit 33 4G 100 Perkinsus Marinus GRRLLHGNYFTRYLFGSLAVIWIAEYAAACQYGIPRHRNPNWMWSWWLEKQNQIKNGEIPANTPGYAMVKWNNEAEQRWLKTLNVEAMNEEFARRREAYY
Cytochrome c oxidase subunit 30 4H 141 Perkinsus Marinus QVPDVFATFGWERRLTVIHHPGVMAISKLLDQRTVVKPRATFNQELVEEIGDYDEDLQRKAQVALDNGLAIEWRVLDFIDDELPRLLAEKREIEKAREQVMSKAPGDYTQPVFDSSVVVPTPANLGRNYPTLNLPSGDPTE
Cytochrome c oxidase subunit 6C 4I 196 Perkinsus Marinus AYNGGYPFHYVVQYDDPNYDCEADFEFEEIPRDEFGVPAHIPPELSTQIRHTYYVPPQYYPFLKKLGEDTPELKPYTDKLIMGDMTYDDYEEMFYKFAKPLKIYRSRLPLPYRTDEEISQEKYVNWCGRWYSYRQRLQGDYYSRHYFRDWLIGVMLGMYLGNLCVQQHRQYRVDMKLFYLEAPEHKINWVKPRGDL
Cytochrome c oxidase subunit 24 4J 186 Perkinsus Marinus GCEAVKNPLIGGPNQKARGAITSGFAGGGAKRLGGKGYGIMADWCDHGYSFTKGQAITGMPHWPLWCGGGVPDKFIKIDPDVHFNLQGYRERIGWYGFFTAFLQANYHAFVYFVRFIPINIAIFWIYVNERQREPQENVMDHEEFFRDFDSIYLGQVFDHHRFAEWLARRRAVKWGYADQIHIPPV
Cytochrome c oxidase subunit 37 4K 93 Perkinsus Marinus RGSVFQMPSTPVYPLTTTKKVAPPTALAKRTPEQPFGWGSPVREDRAWRVVPRNFIILVIVYLSGWAAIKTMLPRGGSILGQIYGGPPKGRLI
Cytochrome c oxidase subunit 7A 4L 122 Perkinsus Marinus VTRYPSGTRTIMSPYPGGPVYQWLRINYNYFKRYQWRRVGRWQMRSWCYWKAAFYGVPEWNIDPTKNQWRWCVDPAWYGGMRDKANMDMYRLMVYPFFGYALLYLHSRFKQNDKYNVFAKWR
Cytochrome c oxidase subunit 35 4M 98 Perkinsus Marinus AVRSQIEAAVYKWTRPRPPRLGVAVPRSPPGTGILFHTNMQTIRYSLSPKVWVLVTGAALVGVFSGQRFAQTVLLSKNPPNPPRYREKPPVRHPHTPD
Cytochrome c oxidase polypeptide II 4N 131 Perkinsus Marinus SPEDYPTPQKYLEGAPIPSWYSFQSNLVGDMDLKPGMARMLEVDKRLTVPTRTHIRFLITGADVIHSWSVPSLGIKCDATPGRLVKINTFIQREGVFYGQCSELCGTLHAFMPIVVEAVSPEAFAAHAKKW
GINS subunit domain-containing protein 4O 47 Perkinsus Marinus DIPWPARTDWGGHDPATPFAELMINTHSMFWPVAIFIYVSAIYMVKK
Cytochrome c oxidase subunit 2A 4P 180 Perkinsus Marinus KSYYDDFKDRLKPGKYTQGRCPQSEGDYRQESKTIGREHLNDDGTRSKRYTVKEADALGYHYHPPIDKKGQVYVKGPNTVIERGQTWIKGYELPSMEYTYGPKQEDIPFYPRVKLNVWGNYNLVMKVEFLFFYLPTIIVFGICIPVYTINFAQEEVIYTTMTVKVTGRQWYWVYEVESPT
Transmembrane protein 2P 158 Perkinsus Marinus ANLLLVPSDITIIEEKNKIAKRRIRLLEKTGLALMFPVFHWRYSKLDKHDMYNILRRKFDPSASDPAIDICRRRQESVRRRVIAQNGLLPGLLLGVSLPWWSLRRYNYQSKLIVLPFCAYFGAICGRIAGHGLSWRWVETDRQRMLGNLPAKVYYRPK
Cytochrome c oxidase subunit 1 4Q 459 Perkinsus Marinus FYILVNNNKRIGIYYIKLSIIIGILGIVLSYIIRVELYNSGNRIIKYDNVNYYNMVITLHGLLMIFYIIMPGLYGGIPLYILPILSVITDIVLPRINNISIIIVLISYIVVINSIVIEYNIGTGWTLYPPLSIIGTVIVNMILYGLIIIGISSIISAINFMNILIVIDGIIYVYIWSIIITSVLLIISLPILNGILLMILSDIYFNSIYFILNGDVVLYQHLFWYFGHPEVYILILPAFGIISIILSVLNNKIIFGMKSMILAIIMISILGSIVWAHHIYTVGLELDTKIYFNNLTLIISIPTGNKIYNWIILYIGSYNILYNGYQSLIFSIMFIIIFIIGGITGIIISIDIIDIGLHDTYYIVSHFHYILSIGAVISLLAGILLLKDIIGYYNVIIKINKYFGLLLFININIIFTPQFIIGFNVMPRRILEYSDNIIVWNLISSIGSISTILILLSIF
Cytochrome c oxidase subunit 32 4R 103 Perkinsus Marinus GRELPEYVVLPHNQQRYGRDKSYSYFTCLWHFPKMVFTEKWCYTNIMWFVFWTGFWFIPNYIWWERRYAYQKAGFHWEHTNRKLQARKEALGMDKVPASGMDW
Cytochrome c oxidase subunit 7C 4S 65 Perkinsus Marinus NLEDHFDLAEYMMKMHNPMSEYLYWIAGFVSGLHGILPLLHSNYYFSGMFLPRDNDNTQLCDDSW
Cytochrome c oxidase subunit 13 4T 121 Perkinsus Marinus TWTEIWWEHDPTPKVAQYRPYVCTVESGKVYWWCACGESKTQPWVDGHCKCSKREGGFRPRRWEPEHDGVRLFCGCKSCFSSPTWNGGCFTKWMQSNPAGGMLYCFAAAFGFGTLTVYRKF
Amino acid transporter transmembrane domain-containing protein 4U 91 Perkinsus Marinus YTPSFERGLNPELTSGDYGDMPKPQPLIDFFTQNRNPWFGFAMFCGFNFLWWAFFGAWQIRPLWASQRKSLAEADRLYGPTKYGVGKKYIN
Cytochrome c oxidase subunit 4 4V 185 Perkinsus Marinus RIGGPPVFMQFPPPPPKEYLADGTPKTYPLHQPVFDHGYTWEHWYMTNAGVFHTVYYGEFAKDFPWRWGFVAEKPFWVGAPILVLGVLCLGHIIQTMGQIGVRPKRYTPEWVEATKERERAENTNPITRYLDRRRAERGPYYLMSNVLPYHPHFLWMRNSHDYEAAEALAARREKDRELAAKLEA
Cytochrome c oxidase subunit 19 4W 141 Perkinsus Marinus KHFFTDGANDYVTGWENTPPLKFPASVMKPCDYSMTKPIPKHWKLRGSGIHGPENTDLMKLVLWNRLKQKRPQREVPNINYLKDSIRLELSVNWWLMSCIFLWGPWLHWGQEYQKVHEQPPWAMKRIDGLRGEGYFTWFLE
Cytochrome Coxidase subunit, putative 4X 226 Perkinsus Marinus YRHWHRMSEDDWALPLDSMPEDVKTLMATPQTERGFVEDYWYNRIRGEATLLDPEALPSKSYIALARDMGLQIVDEPSSHMMGLIELYEYLRGASFVGPFGTIENPVLVPAVGQERVVACTGGVGDEEHFTLWFRCREGFMYRCGECDQIFMLVRLYYEDRYWTQTLVRDTFMSDGDMFDLKTLERVHKMWNKDEMVRWEVGYWAQDYVLGKGVLPGMVEEHTRVN
Cytochrome c oxidase subunit 18 4Y 107 Perkinsus Marinus IYEGQTVQESELIPQEDDWVIEETNFCLGRNCYVRFREEDDLARRALHQMDSQLNKMHTRLRDGTVIPYMSFHPDEMVDRPAPIHTFSEKPLLKWTWDETYEEAYDD
Cytochrome c oxidase subunit 31 4Z 186 Perkinsus Marinus PPTRLSTPLYSEGGAFTVNWWRNRYGLYSRRQTDPMLAEFLFRQQVKEWFYDVPSYNYAALVGLALGILVAVIWRHFLFNPDVYVRRQELRKMWPDRHRQFAYAVPYLNPQLKNLLLPYKNSFIDNEPDYADYNPVGLRPQRVMAIRRIPGFFWAIPQYFFEDPLYTSCSTKNMQTIYKKLGYSEL
Kinesin-like protein 2Q 69 Perkinsus Marinus NKPVVVNTSGVVNTAVLGISGAWLYFYCVPLRRKEWYDIMMDYVHHKRTQYASNFPDKAVRTALRFAKV
SDHH 2R 117 Perkinsus Marinus SGNAARGPPLYDLPGNFRYAKEFFTKPAISYGEFHQQCTSLRLFVCAGTVGYMLFSFTMWPCRSSYWKNWAVWKVPGNIMHHFSKRSGSIFLDEPLKRTIDVPKTYAHLIATRRLPG
DUF6827 domain-containing protein 2S 165 Perkinsus Marinus XMLTVDKFTRAEALQRASNLYYQVLGTNWEDGLNLVLDVPFWESELEKVDHMCEPYLCDDEIGPIIRNLHETVNCMYACEDVRDHINELLELSSRAEGVMGSGAAASEEVENMPEQCGMVTKAYEDLLARYPEHHPKIEQTVGHGLAVLRQLEKFNFKSSHRYFF
Rab-GAP TBC domain-containing protein 2T 82 Perkinsus Marinus ARVPEDIEFTKNRYTRRYNLATEDRVKLLNWNAFCIAVTALPIAYVYYSWYESSEDTDMIYRTMDPMREAKADYYLPLLRGH
Syntaxin-1A 2U 48 Perkinsus Marinus SYKSAHQETPLTYYRATQHATSSINHRLAYINAVFVIWVCDSLNDVDQ
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-07-05
Deposition Author(s): Amunts, A. , Wu, F.