PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9FGU

Sars-cov-2 (b.1.1.529/omicron variant) spike protein in complex with the single chain fragment scfv76-77 (focused refinement)

PDB DOI: 10.2210/pdb9fgu/pdb

Classification: VIRAL PROTEIN
Organism(s): Enterobacteria Phage T4 , Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-05-25
Deposition Author(s): Berlinguer, M. , Bolognesi, M. , Chaves-Sanjuan, A. , De Santis, R. , Milazzo, F.M. , Minenkova, O.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.3 Å

9fgu
Literature

Sars-cov-2 (b.1.1.529/omicron variant) spike protein in complex with the single chain fragment scfv76-77 (focused refinement)

Berlinguer, M. , Bolognesi, M. , Chaves-Sanjuan, A. , De Santis, R. , Milazzo, F.M. , Minenkova, O.

Primary Citation of Related Structures: 9FGU


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein,Fibritin C 1214 Enterobacteria Phage T4 , Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISRFDNPVLPFNDGVYFASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVPEDLPQGFSALEPLVDLPIGINITRFQTLLALHRSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKSKRSFIEDLLFNKVTKFKGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDIFSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
scFv76-77 single chain fragment E 265 Enterobacteria Phage T4 , Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RTMEEVQLLQSAGGLVQPGGSLRLSCAASGFTVSANYMSWVRQAPGKGLEWVSVIYPGGSTFYADSVKGRFTISKDNSKNTLYLQMNSLRVEDTAVYYCARDLSVAGAFDIWGQGTLVTVSSGGGGSGGGGSGGGGSEIVLTQSPGTLSLSPGEKATLFCRASQTFSSNYLAWYQQKPGQAPSLLIYGGSTRAAGIPDRFSGSGSGTDFTLTINRLEPEDFAIYYCQEYGSSPRVTFGQGTRLEIKRAAAGDYKDDDDKHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-25
Deposition Author(s): Berlinguer, M. , Bolognesi, M. , Chaves-Sanjuan, A. , De Santis, R. , Milazzo, F.M. , Minenkova, O.