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9E93

Structural insights into hiv-1 vif-mediated ubiquitination and degradation of apobec3h

PDB DOI: 10.2210/pdb9e93/pdb

Classification: VIRAL PROTEIN/RNA
Organism(s): Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes

Deposited: 2024-11-07
Deposition Author(s): Matsuo, H. , Skorupka, K.A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.58 Å

Literature

Structural insights into hiv-1 vif-mediated ubiquitination and degradation of apobec3h

Matsuo, H. , Skorupka, K.A.

Primary Citation of Related Structures: 9E93


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*UP*GP*CP*CP*GP*GP*GP*UP*A)-3') c 9 NA UGCCGGGUA
RNA (5'-R(P*UP*GP*CP*CP*GP*GP*GP*UP*A)-3') g 9 NA UGCCGGGUA
RNA (5'-R(*AP*UP*AP*CP*CP*CP*GP*GP*CP*A)-3') d 10 NA AUACCCGGCA
RNA (5'-R(*AP*UP*AP*CP*CP*CP*GP*GP*CP*A)-3') h 10 NA AUACCCGGCA

Proteins
Molecule Chains Sequence Length Organism Sequence
single-stranded DNA cytosine deaminase A 185 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes GSMALLTAETFRLQFNNRRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWKLVDFIQAHDHLNLRIFASRLYYHWCKPQQEGLRLLCGSQVPVEVMGLPEFNDCWENFVDHEKPLSFDPCKMLEELDKNSRAIKRRLERIKQS
single-stranded DNA cytosine deaminase E 185 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes GSMALLTAETFRLQFNNRRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWKLVDFIQAHDHLNLRIFASRLYYHWCKPQQEGLRLLCGSQVPVEVMGLPEFNDCWENFVDHEKPLSFDPCKMLEELDKNSRAIKRRLERIKQS
Core-binding factor subunit beta O 170 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQ
Core-binding factor subunit beta S 170 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQ
Virion infectivity factor P 176 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDCFSESAIRNTILGRIVSPRCEYQAGHNKVGSLQYLALAALIKPKQIKPPLPSVRKLTEDRWNK
Virion infectivity factor T 176 Escherichia Coli Bl21(De3) , Homo Sapiens , Human Immunodeficiency Virus 1 , Pan Troglodytes MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDCFSESAIRNTILGRIVSPRCEYQAGHNKVGSLQYLALAALIKPKQIKPPLPSVRKLTEDRWNK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-11-07
Deposition Author(s): Matsuo, H. , Skorupka, K.A.