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FASTA Sequence PDB Format mmCIF Format
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9E76

Yeast v-atpase vo proton channel bound to nanobody 1wva25

PDB DOI: 10.2210/pdb9e76/pdb

Classification: PROTON TRANSPORT
Organism(s): Klebsiella Phage Phiko2 , Grouper Iridovirus

Deposited: 2024-10-31
Deposition Author(s): Knight, K. , Wilkens, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

9e76
Literature

Yeast v-atpase vo proton channel bound to nanobody 1wva25

Knight, K. , Wilkens, S.

Primary Citation of Related Structures: 9E76


Proteins
Molecule Chains Sequence Length Organism Sequence
V-type proton ATPase subunit d B 345 Klebsiella Phage Phiko2 , Grouper Iridovirus MEGVYFNIDNGFIEGVVRGYRNGLLSNNQYINLTQCDTLEDLKLQLSSTDYGNFLSSVSSESLTTSLIQEYASSKLYHEFNYIRDQSSGSTRKFMDYITYGYMIDNVALMITGTIHDRDKGEILQRCHPLGWFDTLPTLSVATDLESLYETVLVDTPLAPYFKNCFDTAEELDDMNIEIIRNKLYKAYLEDFYNFVTEEIPEPAKECMQTLLGFEADRRSINIALNSLQSSDIDPDLKSDLLPNIGKLYPLATFHLAQAQDFEGVRAALANVYEYRGFLETGNLEDHFYQLEMELCRDAFTQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNYISVY
V-type proton ATPase subunit c'' C 213 Klebsiella Phage Phiko2 , Grouper Iridovirus MNKESKDDDMSLGKFSFSHFLYYLVLIVVIVYGLYKLFTGHGSDINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNLISIIFCEVVAIYGLIIAIVFSSKLTVATAENMYSKSNLYTGYSLFWAGITVGASNLICGIAVGITGATAAISDAADSALFVKILVIEIFGSILGLLGLIVGLLMAGKASEFQ
V-type proton ATPase subunit c' D 164 Klebsiella Phage Phiko2 , Grouper Iridovirus MSTQLASNIYAPLYAPFFGFAGCAAAMVLSCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSPTEDYTLFNGFMHLSCGLCVGFACLSSGYAIGMVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIVALILNTRGSE
V-type proton ATPase subunit c E 160 Klebsiella Phage Phiko2 , Grouper Iridovirus MTELCPVYAPFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVVC
V-type proton ATPase subunit c F 160 Klebsiella Phage Phiko2 , Grouper Iridovirus MTELCPVYAPFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVVC
V-type proton ATPase subunit c G 160 Klebsiella Phage Phiko2 , Grouper Iridovirus MTELCPVYAPFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVVC
V-type proton ATPase subunit c H 160 Klebsiella Phage Phiko2 , Grouper Iridovirus MTELCPVYAPFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVVC
V-type proton ATPase subunit c I 160 Klebsiella Phage Phiko2 , Grouper Iridovirus MTELCPVYAPFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVVC
V-type proton ATPase subunit c J 160 Klebsiella Phage Phiko2 , Grouper Iridovirus MTELCPVYAPFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVVC
V-type proton ATPase subunit c K 160 Klebsiella Phage Phiko2 , Grouper Iridovirus MTELCPVYAPFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVVC
V-type proton ATPase subunit c L 160 Klebsiella Phage Phiko2 , Grouper Iridovirus MTELCPVYAPFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVVC
V-type proton ATPase subunit e M 73 Klebsiella Phage Phiko2 , Grouper Iridovirus MSSFYTVVGVFIVVSAMSVLFWIMAPKNNQAVWRSTVILTLAMMFLMWAITFLCQLHPLVAPRRSDLRPEFAE
V0 assembly protein 1 N 265 Klebsiella Phage Phiko2 , Grouper Iridovirus MVFGQLYALFIFTLSCCISKTVQADSSKESSSFISFDKESNWDTISTISSTADVISSVDSAIAVFEFDNFSLLDNLMIDEEYPFFNRFFANDVSLTVHDDSPLNISQSLSPIMEQFTVDELPESASDLLYEYSLDDKSIVLFKFTSDAYDLKKLDEFIDSCLSFLEDKSGDNLTVVINSLGWAFEDEDGDDEYATEETLSHHDNNKGKEGDDDILSSIWTEGLLMCLIVSALLLFILIVALSWISNLDITYGALEKSTNPIKKNN
Yeast V-ATPase subunit f O 85 Klebsiella Phage Phiko2 , Grouper Iridovirus MRPVVSTGKAWCCTVLSAFGVVILSVIAHLFNTNHESFVGSINDPEDGPAVAHTVYLAALVYLVFFVFCGFQVYLARRKPSIELR
Nanobody 1WVA25 Q 146 Klebsiella Phage Phiko2 , Grouper Iridovirus QVQLQESGGGLVQPGGSLRLSCVASGFTFSRYAMTWVRQAPGKGLEWVSDISSGGSSTFYTDSVKGRFTISRDNAKNTLYLQMNSLKPDDTAIYFCAKGVPSYYSDYERRSKRYDSRGQGTQVTVSSAAAYPYDVPDYGSHHHHHH
Nanobody 1WVA25 R 146 Klebsiella Phage Phiko2 , Grouper Iridovirus QVQLQESGGGLVQPGGSLRLSCVASGFTFSRYAMTWVRQAPGKGLEWVSDISSGGSSTFYTDSVKGRFTISRDNAKNTLYLQMNSLKPDDTAIYFCAKGVPSYYSDYERRSKRYDSRGQGTQVTVSSAAAYPYDVPDYGSHHHHHH
Nanobody 1WVA25 S 146 Klebsiella Phage Phiko2 , Grouper Iridovirus QVQLQESGGGLVQPGGSLRLSCVASGFTFSRYAMTWVRQAPGKGLEWVSDISSGGSSTFYTDSVKGRFTISRDNAKNTLYLQMNSLKPDDTAIYFCAKGVPSYYSDYERRSKRYDSRGQGTQVTVSSAAAYPYDVPDYGSHHHHHH
Nanobody 1WVA25 T 146 Klebsiella Phage Phiko2 , Grouper Iridovirus QVQLQESGGGLVQPGGSLRLSCVASGFTFSRYAMTWVRQAPGKGLEWVSDISSGGSSTFYTDSVKGRFTISRDNAKNTLYLQMNSLKPDDTAIYFCAKGVPSYYSDYERRSKRYDSRGQGTQVTVSSAAAYPYDVPDYGSHHHHHH
V-type proton ATPase subunit a, vacuolar isoform A 840 Klebsiella Phage Phiko2 , Grouper Iridovirus MAEKEEAIFRSAEMALVQFYIPQEISRDSAYTLGQLGLVQFRDLNSKVRAFQRTFVNEIRRLDNVERQYRYFYSLLKKHDIKLYEGDTDKYLDGSGELYVPPSGSVIDDYVRNASYLEERLIQMEDATDQIEVQKNDLEQYRFILQSGDEFFLKGDNTDSTSYMDEDMIDANGENIAAAIGASVNYVTGVIARDKVATLEQILWRVLRGNLFFKTVEIEQPVYDVKTREYKHKNAFIVFSHGDLIIKRIRKIAESLDANLYDVDSSNEGRSQQLAKVNKNLSDLYTVLKTTSTTLESELYAIAKELDSWFQDVTREKAIFEILNKSNYDTNRKILIAEGWIPRDELATLQARLGEMIARLGIDVPSIIQVLDTNHTPPTFHRTNKFTAGFQSICDCYGIAQYREINAGLPTIVTFPFMFAIMFGDMGHGFLMTLAALSLVLNEKKINKMKRGEIFDMAFTGRYIILLMGVFSMYTGFLYNDIFSKTMTIFKSGWKWPDHWKKGESITATSVGTYPIGLDWAWHGTENALLFSNSYKMKLSILMGFIHMTYSYFFSLANHLYFNSMIDIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVKDGKPAPGLLNMLINMFLSPGTIDDELYPHQAKVQVFLLLMALVCIPWLLLVKPLHFKFTHKKKSHEPLPSTEADASSEDLEAQQLISAMDADDAEEEEVGSGSHGEDFGDIMIHQVIHTIEFCLNCVSHTASYLRLWALSLAHAQLSSVLWTMTIQIAFGFRGFVGVFMTVALFAMWFALTCAVLVLMEGTSAMLHSLRLHWVESMSKFFVGEGLPYEPFAFEYKDMEVAVASASSSASS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-10-31
Deposition Author(s): Knight, K. , Wilkens, S.