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FASTA Sequence PDB Format mmCIF Format
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9DEI

Trypanosoma brucei mitochondrial rna-editing catalytic complex 1, u-deletion (recc1)

PDB DOI: 10.2210/pdb9dei/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Trypanosoma Brucei

Deposited: 2024-08-29
Deposition Author(s): Aphasizhev, R. , Jih, J. , Liu, Y.T. , Zhou, Z.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.99 Å

9dei
Literature

Trypanosoma brucei mitochondrial rna-editing catalytic complex 1, u-deletion (recc1)

Aphasizhev, R. , Jih, J. , Liu, Y.T. , Zhou, Z.H.

Primary Citation of Related Structures: 9DEI


Proteins
Molecule Chains Sequence Length Organism Sequence
KREPB5; RNA-editing catalytic complex core protein, B5 A 384 Trypanosoma Brucei MRRAVVLHTAAPMCALTGKCVEDWESHRKSFDMRIFELLKGRVTSPTEPLPIKQIYATIANPCRLVEEFTCAKTTRRLGRLHTALSFLRRHNVLLHSLLFHVKETQTWNTTPDFDRLALYGESSLRHEVRARTLRLFPGIDSETYAALTSSVLSEEALHGLFDRLLMKALVGEKPVGKMRDWSLTPNQCGQMLCAIVGEMSWFAARTKATDRTHNNALFPPSDALILHVLCCHVLESLPAELLYNVLEPKVQRIKENWVNEPMSIPEQLHLKPRTIGSLSLSLVAKPLTEEEGRRKEVAVSAEKCQLSLTPERVIGSVRSTMLPRWNYKRFEERRYHILESDKRQVLPLAMSPVGRGDVSLASEQMPDERRRELVALALGGRYR
RNA-editing complex protein MP81 O 762 Trypanosoma Brucei MRRLTRRSDRLCGKGNGGSCLQMSPTHVGAVVTWSLNRLMPLHTRTIPLRCSLPTPESGTTEPRELCFYETFELTGEDVHYLLLHEAHVKHGVLLNVPPQLAPNGTPPEVPEVIMPAAQLERMGGMKLAYEPTHLPPPLHTTGARQLVLDESFYTTPTKEKKATTTAVSHVSESTAASGGRGGASATAAGTALPPRLPPDPTMKFHCSACGKAFRLKFSADHHVKLNHGSDPKAAVVDGPGEGGLLGGAVTITTAKVAKHSSSAASGTASRAGDSATLDVKQQPDPQKELSASGISAVKIPYSKAVLSLPDDELVDELLIDVWDAVAAQRDDVPKSNSANIFLPFASVVTGTADRRKEMEAVARPTARATPEGAAPGIKRPGAMAGGAVAVGKGRSGGQILPIRELIKKYPNPFGDSPNAAVQDLENEPLNPFLPEEELAAQLQVACEEDTVVTPSACTTDVSTGSVIGKKGSLEKLKEKLRGTRPSMAASAAKRRFTCPICVEKQQTLQQQQSENVGSGFCTDIPSFRLLDALLDHVESVHGEELTEDQLRELYAKQRQSTLYPQKSSTGDGAGSRETPDDSEKKEGSVGNTSMDELKSLPEEVRRVVPPAPVEQDALAVHIRAGSNALMIGRIADVQHGFLGAMTVTQYVLEVDGDERINSKGVTTPASACTPDPASTKAVEAKGEEGEVVEPEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDDVSKRLHAYPFIQVVPPLGYVKVVG
KREPB8; RNA editing catalytic complex core protein, B8 B 368 Trypanosoma Brucei MHRGPPALLHNVGVATRSKSFAASTKLPGRLTPLPSTSSTLQPTNTLLSSSAGIASLRQLVSASTLTSTSTSGKKRVGSLDAHCRLLSRGTSADSYMPMTSRSFDVFEGNNKQAWLDLKTGWCHLCQEPLGATMGVHIGDRDHTNLQYFLFLYAAHGRRWSSEEVLRSCLATAPTVHNYATRHTTWDHLHVMDDALRRAELEALLFHLTHPPQQALSHVLQGRSPLGFWYSGERMWKLRISRLVTQVFPPISAGMMTNFTQKCWGRSNGERMYDALRLQRIKAYYGWQPYESKEKKAFFVRQLLWELLSVEVRDEVDELTKHMADLALRRMAFEMIFLQSMEYMHKVQYVYDLMGRPTVDELAAMNLL
MP90 C 818 Trypanosoma Brucei MGLHWPLARSSNWCHMRALSNEHLRRRVGAAVRSIASTAPCFALERVEVAHSHAYSRRGVTVGFTSSSSSPSGKTGSGGLSPASQSLHSSSSFDASNGDVLANYVNFVADDATGPAATKENGAQPMRSLRSASAVENLLFTDAAKNYCRLCMEEVQVTPKAHISTPYRGSHTNHTCREVVLDSLALLAIRGYPIDDVYFVWADTLYQSSVFQRIPELVSPRWTVDKRSEVLAKILFMLKDMGVIDISLAAQAPDLFDNTAQQVHHRRRVAFERLEYIGDNSWGNHLSNRMMLLFPDRQWTYSQNAYTFNCFRDACEMNVTLEFMFDTLRVGELLPPGVREKLGTGKIKADVVEAVIGELHVTLWGLEPQLYDSVCFVEINGVGEARLAALVQHCLTEIYDLIVLSYVQELSGSAVPLAKQIAADRIWNSVYPPVRKAKDRAPGGRKSRSTVVNVVGVGEVRQLPSLPSLFPAASKRPTRAPHPLRRLRKLGEIPEETVCAGTNKDVFVHLIESYERLDMLDDSLLPTLNMRRLQDVQFSKLKRQLVPSLSPAALEELHNCKELDAESVTPHKVGDKEVATDERVLDLEEVYFRDKYFDLFPTPLPNEVVTKEGDCDKRQSGASTSRAVIISLPRGFDGSRPCNRAQLHMARNTIYPSLTERPAHSPTAGITKGDRVCLFSLSVYVPPDTKRPSAGVVTDKNLHFGEFAFHGVRIKGIECASEPECISRRSNAPGSDVGTSLNRSSWKEGGDNSCGTLTVEDGTGENSVVGEDGDTGVNGGEGKAEDATGKHLLRAKWCRENPFFPRASLPLLGISVGA
RNA editing complex protein MP46 D 414 Trypanosoma Brucei MLRVENLRRSMTRLARHSLIRAVPFSPLSVGSSTDQTFGAPTRTPFRSHTCLLCDVSYESWGDHAESTTHIARHAICRTFVSPERHNAVMQQLWKHIRLDFGYVDEVTHKKEDRRRMRLASTMRHLQEKGVLHHSLPRVTVDAQSEVSLTVESDSFVNYMFLGESFARQETLDRVARLMPRAEALELSSIISFVLSKRRLAHFFDIFDMRKMVLNGDSSDDKASADGDVPPTIPRLQQDGKAVILFSCLGELQMFSRRDRSHSVATRSAAEQLVLNVLGTHVMENIIGELVHEALQTVVEEGTAVWREHCGELKHKLFEGTKAASPPIATTPNPVSNSGGPEVTADVNDQMWVDLCRLYVLDKNGSVPQLQPTVKRHSWHDVARALTLELTVPNPVNKSAVFAAAAPRLATKKK
MP18 RNA editing complex protein, putative E 164 Trypanosoma Brucei MLALTSRRLLLQQTFMRCCKSVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRTVPAAVNPAVEDIKSEKEGAGGDQSGVPS
MP18 RNA editing complex protein, putative H 164 Trypanosoma Brucei MLALTSRRLLLQQTFMRCCKSVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRTVPAAVNPAVEDIKSEKEGAGGDQSGVPS
MP18 RNA editing complex protein, putative J 164 Trypanosoma Brucei MLALTSRRLLLQQTFMRCCKSVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRTVPAAVNPAVEDIKSEKEGAGGDQSGVPS
MP18 RNA editing complex protein, putative M 164 Trypanosoma Brucei MLALTSRRLLLQQTFMRCCKSVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRTVPAAVNPAVEDIKSEKEGAGGDQSGVPS
MP18 RNA editing complex protein, putative P 164 Trypanosoma Brucei MLALTSRRLLLQQTFMRCCKSVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRTVPAAVNPAVEDIKSEKEGAGGDQSGVPS
RNA-editing complex protein MP42 F 393 Trypanosoma Brucei MKRVTSHISRFLPLVLSQRGLSTYASPHVSSMRYYGATKCLLASTPDTPSFQCGECGKAFRLINALNHHIMTKHAGKAKAMMNKGGKLEEVNPEEIKNKPQGAMSQPTSPPPSSSTSGTEAASTSPTHSSFPGIPFSPVGGIGLVGTPVGAASHVVNTTTTAANSASGNALSDENADKKTFVCTICQKTFRLEAALQHHYQAKHNMEMPTSSSSSGGASAQPVLQGGATTAGVGSVGFSHTEEETGRSAMGTQYVHSQETILPQAPQYHLDVAPNAPEEGEVAAHWRCVNHCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRMVPQYDGSMRKYYHYPVIQVHPGCGSVLKV
RNA-editing complex protein MP42 N 393 Trypanosoma Brucei MKRVTSHISRFLPLVLSQRGLSTYASPHVSSMRYYGATKCLLASTPDTPSFQCGECGKAFRLINALNHHIMTKHAGKAKAMMNKGGKLEEVNPEEIKNKPQGAMSQPTSPPPSSSTSGTEAASTSPTHSSFPGIPFSPVGGIGLVGTPVGAASHVVNTTTTAANSASGNALSDENADKKTFVCTICQKTFRLEAALQHHYQAKHNMEMPTSSSSSGGASAQPVLQGGATTAGVGSVGFSHTEEETGRSAMGTQYVHSQETILPQAPQYHLDVAPNAPEEGEVAAHWRCVNHCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRMVPQYDGSMRKYYHYPVIQVHPGCGSVLKV
KREPA2 G 587 Trypanosoma Brucei MYRRFFRSAAVKHLGTTSAQCLMRATKYPCGAMCRNASSCHPQTLGYQQRFQSTTDKKFHCSVCKKPFRLEMAAKLHLQQAHGGDGSVEAGPGPGVEASSVNVVSTPVPSPISPVERTFVDEEERRPRRMRPTPKPLHQPDRDIPAAAMEEMLGVWDKIGLNRLEGNFVHSTMVMKVFAAPPDVSEIPLYEHVAPEGENPFDSLDHMTTGTVDATYVGHDAFAEVDLVDPFVAAPDQTLNPFRAGKVRNPFTRISPTQREVVKPLQPPQPKEEPLKAPVTPFGQLPMFGQTREPSASFAAAAVSVQAAANPNEVSSPFAAAVSSSPFVGQVASPFAPAQDVAGSPFEASPCAASSPFVTAGGQETSPFAAPSTPASFGQGSLFPPMGTGAPGFTAITETEQRQQELEHGCPTCGKKFSTFEGAAMHSKSKHGIVLESKKVKDRLNRKGVPDLPAYVPSPVDLSSTSPFGTRSAIGASWAETELIPHAQCVSNITIVGRVLDVSQASENVSHVTVFVEGERSGEEETLTLCCFGEVSQKIRGTLKRNATIFASGTLRLHPVYEASNNKYYVSPVVHVSMPTGTLAVIT
KREPA2 K 587 Trypanosoma Brucei MYRRFFRSAAVKHLGTTSAQCLMRATKYPCGAMCRNASSCHPQTLGYQQRFQSTTDKKFHCSVCKKPFRLEMAAKLHLQQAHGGDGSVEAGPGPGVEASSVNVVSTPVPSPISPVERTFVDEEERRPRRMRPTPKPLHQPDRDIPAAAMEEMLGVWDKIGLNRLEGNFVHSTMVMKVFAAPPDVSEIPLYEHVAPEGENPFDSLDHMTTGTVDATYVGHDAFAEVDLVDPFVAAPDQTLNPFRAGKVRNPFTRISPTQREVVKPLQPPQPKEEPLKAPVTPFGQLPMFGQTREPSASFAAAAVSVQAAANPNEVSSPFAAAVSSSPFVGQVASPFAPAQDVAGSPFEASPCAASSPFVTAGGQETSPFAAPSTPASFGQGSLFPPMGTGAPGFTAITETEQRQQELEHGCPTCGKKFSTFEGAAMHSKSKHGIVLESKKVKDRLNRKGVPDLPAYVPSPVDLSSTSPFGTRSAIGASWAETELIPHAQCVSNITIVGRVLDVSQASENVSHVTVFVEGERSGEEETLTLCCFGEVSQKIRGTLKRNATIFASGTLRLHPVYEASNNKYYVSPVVHVSMPTGTLAVIT
RNA editing complex protein I 218 Trypanosoma Brucei MWVRSLLLCIRRDPLQRAVDVAYASGMLLGSGSSRGTTHFSETTAFTSSNFAADLRGGRVGLAGDGGTKCEDRNGELVRGRIQFASRCAEGPFVGASPTVTSCAHIEGVVRQVECGYVGGDRVLQFIIEVEEVPASGGTPMRLPLAVRWRPGSEVAQNRMDEWQKEMERLVGRRVLASGRLQVEECFDSGSRRLYKTPSLVLPATSTVEMISLQELEC
KREPA5 L 169 Trypanosoma Brucei MFSSTFRRLAIRPLNRVTMVGAMHDIQVGFLDRCSVFQFTLTCTVLDFQKVAEPQPKSPGSLPSSTRTAPNANGEEVEKHINKEQYTVRCLGSEAYTEALKNYLDDGCIVRVIGRLKTTEVVDAGKKQPFPCIIVEQGRWSTVSLVHSLRKQRRDWQLQNILTSVATLE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
tRNA-valine (anticodon AAC) r 76 NA CGCUGAUGGUCUAGGUGGUUAUGACGUCGCUUUAACACGGCGAAGGUCUCGGGUUCGAGUCCCGAUCGGCGUACCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-29
Deposition Author(s): Aphasizhev, R. , Jih, J. , Liu, Y.T. , Zhou, Z.H.