PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9D3L

Two dsup molecules in complex with the nucleosome open from the left side

PDB DOI: 10.2210/pdb9d3l/pdb

Classification: GENE REGULATION/DNA
Organism(s): Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct

Deposited: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

9d3l
Literature

Two dsup molecules in complex with the nucleosome open from the left side

Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Primary Citation of Related Structures: 9D3L


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 98 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 98 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 79 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H4 F 79 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H2A type 2-A C 104 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct AKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLP
Histone H2A type 2-A G 104 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct AKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLP
Histone H2B type 1-M D 90 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct KESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Histone H2B type 1-M H 90 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct KESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Damage suppressor protein K 9 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct PPRRSSRLT
Damage suppressor protein L 9 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct PPRRSSRLT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
601 DNA j 124 NA CAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGG
601 DNA i 124 NA CCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.