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FASTA Sequence PDB Format mmCIF Format
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9D3K

Two dsup molecules in complex with the nucleosome open from both sides

PDB DOI: 10.2210/pdb9d3k/pdb

Classification: GENE REGULATION/DNA
Organism(s): Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct

Deposited: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

9d3k
Literature

Two dsup molecules in complex with the nucleosome open from both sides

Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Primary Citation of Related Structures: 9D3K


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 95 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 95 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 79 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H4 F 79 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H2A type 2-A C 102 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
Histone H2A type 2-A G 102 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
Histone H2B type 1-M D 90 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct KESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Histone H2B type 1-M H 90 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Damage suppressor protein L 8 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct PPRRSSRL
Damage suppressor protein K 8 Homo Sapiens , Ramazzottius Varieornatus , Synthetic Construct PPRRSSRL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
601 DNA j 94 NA TGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGA
601 DNA i 94 NA TCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.