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9D1W

Cryo-em structure of pgdm1400 fab bound to hiv-1 bg505 ds-sosip.664 env trimer

PDB DOI: 10.2210/pdb9d1w/pdb

Classification: VIRAL PROTEIN
Organism(s): Salmonella Enterica , Anoxybacillus Sp. Lm18-11

Deposited: 2024-08-08
Deposition Author(s): Gorman, J. , Kanai, T. , Kwong, P.D. , Morano, N.C. , Shapiro, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.44 Å

Literature

Cryo-em structure of pgdm1400 fab bound to hiv-1 bg505 ds-sosip.664 env trimer

Gorman, J. , Kanai, T. , Kwong, P.D. , Morano, N.C. , Shapiro, L.

Primary Citation of Related Structures: 9D1W


Proteins
Molecule Chains Sequence Length Organism Sequence
HIV-1 BG505 DS-SOSIP glycoprotein gp41 A 153 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
HIV-1 BG505 DS-SOSIP glycoprotein gp41 B 153 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
HIV-1 BG505 DS-SOSIP glycoprotein gp41 C 153 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
PGDM1400 heavy chain H 245 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 QAQLTQSGPEVRKPGTSVKVSCKAPGNTLKTYDLHWVRSVPGQGLQWMGWISHEGDKKVIVERFKAKVTIDWDRSTNTAYLQLSGLTSGDTAVYYCAKGSKHRLRDYALYDDDGALNWAVDVDYLSNLEFWGQGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
PGDM1400 light chain L 219 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 DFVLTQSPHSLSVTPGESASISCKSSHSLIHGDRNNYLAWYVQKPGRSPQLLIYLASSRASGVPDRFSGSGSDKDFTLKISRVETEDVGTYYCMQGRESPWTFGQGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-08
Deposition Author(s): Gorman, J. , Kanai, T. , Kwong, P.D. , Morano, N.C. , Shapiro, L.