9CAP
Structure of the lpd-3 complex
PDB DOI: 10.2210/pdb9cap/pdb
Classification: LIPID TRANSPORT Organism(s): Caenorhabditis Elegans
Deposited: 2024-06-17 Deposition Author(s): Clark, S.A. , Kang, Y. , Vanni, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.7 Å
Structure of the lpd-3 complex
Clark, S.A. , Kang, Y. , Vanni, S.
Primary Citation of Related Structures: 9CAP
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Bridge-like lipid transfer protein family member 1 C-terminal domain-containing protein | A | 4299 | Caenorhabditis Elegans | MSDFDIQIKIDDAQLDLKGVSFWVTASVVTLFLAWSTFVVLFFSRVSALFFTFVIDKYLRLSKNGIHFKIGGISISGLHAGKIMFRNVIYDNGDMTIKVNDGHLLFKYWKSVEHRHLNLSTKRASRLHLVLNGLHVNIYNNLTKYTEIARIRRFDWFFENTNMNDARRPQTKPPDTCRSPPSSVWENMWNLLGIVHIEVSAGCILVGNKFLPYALWTRFENLNSKTSVTESANDRALLTFEGETENVAVSLIKNEQFDFTAKDKDPPRTMGNDGCPLLQSASLEFVYKQDLLGYVTDDEPQSITLKLPLWSSEWRFGNNTVLSYGPWAEQQRFLIYSFFYPPDFQNSTATAMPTRGKKRIHVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEFLNFEATTSLIFTKLFSCKKFNVDGSFVYPLTWNGEQTWTIDYAFTKANAWFVWDHKRLFTDLINDWIGDDPSDISKFVPFRVHNRMKVVDGFEVIMLLNESNWVDTADMNAENVEVAIVGEKLSFECELPFVDFLPQTQMVKYEMRGEKSVAMRAKFPPDSATAPIRAALSRLARCNSYAPPSKHGTHSLDTDVWFELWRTELVKMDFDHHYRPLIVKSNIPSDIPFSILSDYLPPPANHPWDLEPDYLGVDILIEGSDVKFTGLLVKLLFELKNNYFGWYDSMTSVDDEKIDDPIKLKASFDKTNANGMKPVEYFRTMNVDVTVRVCNVRAEMLLYSPAIDEGAEPEKVPVVFVEEVAVEVKKTKTQALIQVGVSPACAYLDKSSQGSGPGCITLSGFQFRGHAMYSAKEVAWNMGLVEYGWIMEILVGDIAGTLDFPAHAHVLHQIMESLLMFVISPDDATKVPDRMQFCQHGQLIKACSIAGKKTNEILGPCKTEEQMKYRQIRISVDSVNLTFVEEKTILQISADPVRVTICNAHESRFTEHVCIRVPGISIRQAVRIKEKPENIWIEGANAAIEGVSLDIELPTPKSASPTIGKERLEFVRMHDADTKRLHFLWADHSVWGCACFGNTCFFGDVDEIGSTFMETLTKKKFFVPGIERNPEKQPQVMQSVILKNKPILSNQPHMFYKKPKNADVVITIRKESTGDTESFHSARSQQSPGLRILQSMEMSSSYATFVDNVRVELPSAITVPQFGEPGAILEWCQAHQATRIINDVNTSGVNEVRFLSKPKKSQDIEYNTSRDTLGKRRLAINGVAATSLDLFVTPIGIEAFERLVTAASHSVPAINPCILVHMCYRDCVLKKHRQPLTESLFADEDNDSEPISEVDITVDLPRVSIGLFQCGVKKNIVKSNHTDHITANMGLLLIDRAFIQSKLIPAESVSQDFSADTSNLSSTLYQLNGSAITVQLLQLTNRDAPDFGSSGTATTPNNWEHCAISRRMNNLEPRVMMDFNVSDTLIILERRPIILLLPDKSTTAITPIHSPANAPTPTAMNRTPTLTLTPSAGAGGGERAEPMRKKKKMICEHYLKADIGSVTTALVMARPQELTAGDEFPIYEALAPVMVSWLSVVENFLRTVDKFIHTVECWKSVAMAKVLKLALDSTDEKVVVKVGKNRMGRTRVLSAHQASCPSCILLKTLFRWFAYAGNAPGAINHRLDIRPEFEIEETRKTALMALLSHWQSDVGKELKLVSYEDAHRFKVTRPDEAAIVALTKSKRLKRKMLEKKESSKKETRVVMEVKPEQPKAKRGRMSPAPLLKKLRKKAGDDDFDDDSMKFLSDVEMQEFNTLPLYEDYEDDEMLENLDSEPKIDDKVDLYTWMRNAQRESTLRRRKLAGGAEGSVKDDLNLKGYINPMDIQQKAYYYNIYRWAQLQWTSLDGIEKDHWHLDYSVTLREVDVRMMAKSIKNSSDHLRQYITPAQQKVMQVRNAAVNGGMVWKMERDERRKIPLHGQWNISYSGNVEGIRFLIGMATVSLGKELSLVLRVAMEAKNELRMHSTAESTPRNEVKVFKPVVPNQYDLAVEWDEKVLDMTRDYEKHMQRMRTNKEDVVEKVKVMVNGSAMVSSIVLESVLNDLYVSVTISQIVLAHSKNPMPDIPVVVHAVTLSTTPTAAAAEDKKTATLTKKSVSSTFKIDDLTVSLTKMKLTLSEADSSNKKSDILRCTLNSSSFNVHTNLKTLTSAKESNRPKNNLINSNIATTATLRLGALEGTMPMAAYSLHDVVMRHGKELEQQLNRLAAQPASTPLSSSTPFPSAEQSLLAKVADMKTAPEPVVITQAEFKPLTTLPATAAHVQDAKGQIVRRVPVAVVSFSIELTSIEMNIQLLPSLQAKYRINRATSNGITGVQANWSILLDEHFFEFCVTGQGGKTETFRLQLPSVTSDGLYQAEQGVSSQKPSTDKKLIYREGGSLQMTVVLGRVNHIFTTELLNQLMFAEHSFRTELTALINRIRSSSFASTNSSRSAQSTNDRVNSTANLKLLLPVQTTSTPVHIEKPPLLFSIKIQTKEIPRKDEKTDKDAKTPKASGASGNLDQSQHPSHSTHVKSTPWLQLTAATPTQTAVRLTVDSLEGELTNKWVVKEEGSKERIYGNAVIHFNAKLGQLIKPVPTGDSVAATDVTDLQEFATFMTQVRVENKERNMFNSSYSYHISLNRPIFLVKAAAIDKAILLWLNYKNTYDYWRNEREKVVQEKTTTKLSNAGMFSPTQIAEDADMNLSLAINNGMYMCMPLYSHDVTEGMPALVLSLQKSNLSVLVKKELTCKASFNGFKCSFVDDFDEQALTQSFLDATHSDQSNCIFFPEGTYQLCSKAEATKGPAKWVLSVSAEMQGVEIDLDTRIGKLAKLLVNTFSMIRTDDDDDMSFWGDEGELDSDEEKVEGASELKKLKAEEKVPWMENKMHEHSRAVFELAARGVSNKLIEAEKHKLRQYELIRFKAFRRNVVEKLKKGTTASRQHTETPPPQPRPDTTSRRNSRTTSTSQKNSEDLTTPGDIETVNFNLDVKVNITSGTCTLRTQKKEGANQLALPGILKRLNLGTKDIKAMFEPQIITTTTFSIPSVEIKAYHVSDPSNRSTDEFCKDKREKISKGLAKDADKLHRDLHNKSRFGNTYINGGGGPKTSTVPPPPKRGCFYIFVGLASMPSETVVTPHLATYFEQVLEPLPPSAVFQSQNNTREASVPDDGKGDANNEVHNIMAMDTAAFPIDFVFYLDVQSSTIRFDGKQPTSRSQTQADCLLTLPRLTLELTSKRTRDNIDNYVGGIHISGQFKGFMLKIYNPLELEPDSSRALQLSLDLLSFVISRNKNSSTEPDNRVRFVFSSQISKASFEYNFRRLGELIQFPKPWYRAAIARRVFFGDQAAPRQKDDASDITGTTRSRLPTDPKSLQPPAASTASTGSGSFVPHQRKPWTALVLAAIQWNEFEVTAFMSNTMGKTTWKATKGLVWGDAKLNSLNERDVSISFVLGSSELCARDGAISGTIMLNNLKVSADHSLSADVKRVPVNKAKIRLEWITANIEWMSRRVLIAKWCGPSFKVNDYYKGLKEGDHFALSELGMNVQASWKDLQVVITKSTVDDVAAIVNRLISFIDEQLKNSRILLGNLSASTNLKKQAQALIESRKPTTHFWEKVLDYMSEMQMNEQLMGLMEREGAKVGGHIELKAGGISLVMMKGDMNADTWAVFHLRDACILFDPEARMDFLDNSSQQKIGILLKQTFCLQLGSRHGNQTENRANVCRVQTRFNNSRHLQKAEDILEFFIGDVMKIIGSADHSEKKKLKEVEVIQSPISENENTAKSPTSTFSRFRSPGTSKTKESGPATNHNVMELFQFPGLEAKMSSQQLNGVDDGDKYESVFQMPMDVLTTFVCDFFSEVAIETNFNAQVSFLPELLKSYLKESHSGTSSSHSTNSSPAVSSSKESVVSETSKDPRIFTCQEWKVEPRVRFIDRIKWTPPVLDDILKKLQIFDHRNTIPKVIQRAVLDPLDATLAASVIATLQIVDNKKTIQKFKKSRTDSMAPTPKRRDSRRSSEEVSVSIDIPDIITDISDASFRPKHNGSGVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTLGYGLMCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKGSGLEVLFQGPANSGVDYKDHDGDYKDHDIDYKDDDDK |
| Defect at low temperature protein 1 | B | 276 | Caenorhabditis Elegans | MRIFVFDGTSVIYVCAVIILILIWVAIIGQRQIWRHRHNVARVRPQVSLSSRISSKKAVLLRETQLDTVMRLRCENQARLTDCISLQFHGEKPYVHRMIAVDEVTLEIDGQLNRIEGAVQRQAGESTYSYLKRIREKVPSIPLNLVHRIAFLQESARFRPEKFDVEQVMELRSLLNQFLRILSAEYDSLSDEPDMAAPRGVIASFYQFGQKIMPNNSGSKRRRNKFGGSDGVRLLMKEREEQLSLLSPLARASADSPAPAAHLRRQSDSHSALLPQ |
| Vesicle transport protein | C | 143 | Caenorhabditis Elegans | MPENKEIITIFENSRNYTNLTSESTYSLAGALLLSGKYMNDWWEITLSIFLWMSLSFMVISLGATILSLFTLRKHPYVCFIPIPFIIMMFIIPFVFGAPTSMVLALAMYASKNAVSTWYCAIMGIIQTLLIFVTSVTRIHATL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-06-17 Deposition Author(s): Clark, S.A. , Kang, Y. , Vanni, S.