9C4G
Cutibacterium acnes 50s ribosomal subunit with clindamycin bound
PDB DOI: 10.2210/pdb9c4g/pdb
Classification: ANTIBIOTIC Organism(s): Cutibacterium Acnes
Deposited: 2024-06-04 Deposition Author(s): Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.53 Å
Cutibacterium acnes 50s ribosomal subunit with clindamycin bound
Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.
Primary Citation of Related Structures: 9C4G
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L2 | C | 278 | Cutibacterium Acnes | MGIRKYKPTTPGRRGSSVSDFVELTRSTPEKSLLVAKPKTGGRNNTGRITTRHIGGGHKQAYRIIDFKRYDKDGVPAKVAHIEYDPNRTARIALLHYADGEKRYIIAPDGVGQGTVVVSGPEADIKPGNNLPLRNIPVGTTVHAVELRPGGGAKMGRSAGASVQLVAREGKYATVRLPSGEMRMVDIRCRATIGEVGNAEQININWGKAGRNRWKGIRPTVRGVVMNPIDHPHGGGEGRTSGGRHPVSPWGKPEGRTRNKKKASSRLIVRRRKSGKKR |
| Large ribosomal subunit protein bL17 | M | 187 | Cutibacterium Acnes | MPKPTKGPRLGGSPAHERIILRNLASQLFEHGRVVTTVTKAKRVRPLAEKLINRAKTDTVANRRFVNRTITDRGIVHILFTEIGPRMEGRDGGYTRVTRIGIRKGDNAPMAVIEVISDKVAPKAPASAADAKAQINTATEAKDAEPEAGDAAVEHNAPAEDAAAQAPVADEQEAAEADEKAEEKPEA |
| 50S ribosomal protein L18 | N | 127 | Cutibacterium Acnes | MASTLTVRKSLSDRAKARARRQARGRKKIFGTVERPRMVVTRSSKHVFVQVIDDVAGNTLVSASTMEAELREMSGDKTAKAARVGTIIGERAKAAGITKVVFDKAGNQYHGRIAALADAAREAGLDF |
| 50S ribosomal protein L19 | O | 117 | Cutibacterium Acnes | MSNIIDEIDKASMRDDIPEFRPGDSVKVHVKVVEGSRTRVQVFSGIVISRTGGGVQESFTVRKLSFGTGVERTFPLHSPIIDKIEVDRHGAVRRAKLYYLRGRRGKAAKIKERGSAR |
| 50S ribosomal protein L20 | P | 123 | Cutibacterium Acnes | MARVKRSVNAKKKRREVLDQASGYRGQRSRLYRKAKEQTLHSATYSFRDRRAKKGDFRSLWIQRINAASRAQGMTYNRFINGLKNAGVEVDRKMLAELAVSDINAFNSLVEVAKASQPQNAAA |
| Large ribosomal subunit protein bL21 | Q | 102 | Cutibacterium Acnes | MYAIVRSGGRQHKVAVGDVVEIDKVADEAGSSIELTPLLVVDGESVTSDKDALGKVKVTAEVLGETKGPKIRILKYKNKTGYKKRQGHRQKYTQVKVTGIEG |
| 50S ribosomal protein L22 | R | 153 | Cutibacterium Acnes | MSKTERPSRRAALLGDRPGSYAIARHVRMSASKCRRVINLVRGMDAVDAVTMLKFQPQAAAEPIRKVIASAMANAEQTEGLRADDLYISQAFVDEGITMRRIRPRAKGSASRILKRSAHITVVVEPKEARQARKKAKSGRPAAAAKSETEKGA |
| 50S ribosomal protein L23 | S | 102 | Cutibacterium Acnes | MSELKIRDPRDIILAPVVSEKSYGLLDQNTYTFVVKPTANKTEIKIAIEQIFGVKVTSVNTMNRKGKVRRTRTGVGKRPDTKRAIVTVAEGDRIDIFTGPVA |
| Large ribosomal subunit protein uL24 | T | 122 | Cutibacterium Acnes | MKSLKIKKGDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVNIRKHHRRDMPTPQGGTTKGGIISSEAPIHVSNVQLVTKIDGKDVVTRVGYRRVDVTKRRPDGSEYAAQRSVRYLKKEEAK |
| 50S ribosomal protein L25 | U | 205 | Cutibacterium Acnes | MADIIHLKAEQRTEFGKGAARRIRRDDKVPAVMYGHDHDPIHVTLDGHATLLALRTENPLLSIEIEGQKPMLALPKDVQRDVLKGFVRHVDLLTVRRGEKVDVNVALRITGESAPGTIAMTEFNEIEVQADLLNIPEVIEIDVTGLEAGTTIYLGDLKLPEGTSLLGDAEDVAATVAFPETEPVEDEESAGEDAQGESEEKAAKE |
| 50S ribosomal protein bL37 | V | 24 | Cutibacterium Acnes | MGKTGRKRRARRKKGANHGKRPNA |
| 50S ribosomal protein L3 | D | 223 | Cutibacterium Acnes | MTNERTVKGVLGTKLGMTQLWDEHNRLVPVTVIQAGPCVVTQVRTPETDGYSAVQLGYGAVKAKNVTKPEAGHFEKAGVTPRRHLVELRTADASEYTLGQEIAADVFSESDFVDVTGTSKGKGTAGVMKRHGFGGLRATHGVHRKHRSPGSIGGCSTPGKVIKGLRMAGRMGVERVTVQNLQVHSVDAERGIMLVRGAVPGPKGSLLVVRSAAKKAAKNGDAA |
| 50S ribosomal protein L28 | W | 61 | Cutibacterium Acnes | MAAVCDICAKRPGFGHNVPWSKKKTNRRWSPNIQRVRVVENGTHKRMNVCTSCLKAGRVSR |
| 50S ribosomal protein L29 | X | 77 | Cutibacterium Acnes | MPKLSAAELRQLSGEELRNKVRELKEELFGLRFQSATGQLENTARLREVRKDIARVYTVLQERNLNIVDDPDSTKEA |
| 50S ribosomal protein L30 | Y | 60 | Cutibacterium Acnes | MSKLKITQIKSGIATKPNHRETLRSLGLKRIGDTVIKEDRPEFRGMVRTVRHLVTMEEVD |
| 50S ribosomal protein L32 | Z | 63 | Cutibacterium Acnes | MAVPKRKMSRSNTRHRRSQWKTVATKLVTCANPACGEKHLPHTACPSCGGYGPRGDRRQVVEA |
| 50S ribosomal protein L33 | 0 | 56 | Cutibacterium Acnes | MAKKSGDVRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR |
| 50S ribosomal protein L34 | 1 | 44 | Cutibacterium Acnes | MKRTFQPSNRRRARNHGFRSRMSTRAGRSILAARRRKGRVNLSA |
| Large ribosomal subunit protein bL35 | 2 | 68 | Cutibacterium Acnes | MPKMKSHSGTKKRFKVTGSGKVTARKAGKRHLNEHKSSRVTRRLTGETVLSKGEAAKVKKLLAGHPGR |
| 50S ribosomal protein L31 | 4 | 69 | Cutibacterium Acnes | MKQGIHPDYRETTVVCTCGNTFTTRSTSQSGTLNADVCSKCHPFYTGKQKILDAGGRVARFERRYGKKN |
| 50S ribosomal protein L4 | E | 301 | Cutibacterium Acnes | MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNRIFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQLNTYDVVNARTIVFSQAGLDAFVGARSANTQALSAEPEVPETNVADQHPYGEDSFRGDNPPAGFDIKGNEDSMKFHEPSSPWYGRTIAEVWFRSAAAAEAAGFVNAVKSDSEKEDAK |
| 50S ribosomal protein L36 | 3 | 37 | Cutibacterium Acnes | MKVQPSVKKICDKCKVIRRHGRVMVICDNPRHKQRQG |
| 50S ribosomal protein L5 | F | 210 | Cutibacterium Acnes | MSTDAIAHEMPRLKKQYREQIRAAMQEEFGYRNPMLIPGLEKIVVNMGVGDAAHDSKVMDGAIRDITAITGQKPQVTKARKSIAQFKLREGQPIGCHVTLRGDRMWEFADRLLTLALPRIRDFRGLNSNQFDGKGNYTFGLSEQVMFLEIDQDKIDRIRGMDITFVTTAQTNEEGKALLKHLGFPFKAKDDPKKAKTKRGPAYYAKKKKK |
| 50S ribosomal protein L6 | G | 180 | Cutibacterium Acnes | MSRIGRLPIAVPSGVEVKLDGQYVEVKGPKGTLNFTVREPITVSKNDEGAILVERPDDERENRSLHGLTRTLINNMVIGVTEGYEKKLEIQGVGYRVLSKGPKQLEFNLGFSHPVIVDAPEGITFAVENPTKFSVQGIDKQVVGETAANIRKIRKPEPYKGKGVRYEGENVRRKVGKAGK |
| 50S ribosomal protein L13 | I | 147 | Cutibacterium Acnes | MTTYSPKAGEVQRKWYVIDAEDIVLGRLATTAANLLRGKHKPQYAPHIDTGDFVVVVNASKIALTGKKATDSLRYDHSGRPGGLRVTSIGEMLAKNPRRAVERAVWGMMPKNKLSRQQLKKLKVYGGPEHPHAAQNPQPYEITQIAQ |
| 50S ribosomal protein L14 | J | 122 | Cutibacterium Acnes | MIQQETRLKVADNTGAKELLCIRVLGGSKRRYAYLGDTIVCTVKDAIPGGNVKKGEVVKAVVVRTVKSHRRPDGSYIKFDENAAVLLKGDGEPRGTRIFGPIARELREKKFMRIVSLAPEVI |
| 50S ribosomal protein L15 | K | 146 | Cutibacterium Acnes | MAIELHDLKPAPGAHKAKTRVGRGEGSKGKTAGRGTKGTGARKNVPEFFAGGQMPIHMQAPKLGGFHNPFRTEYQVVNLDKVEALFPKGGKITVDDLVSVGAVRDNELVKVLGTGELTVKVDLVVDAWSKSAQEKIEKAGGSVTKR |
| 50S ribosomal protein L16 | L | 139 | Cutibacterium Acnes | MLIPRRVKYRKQHHPKRTGAAKGGTQLAFGDYGIQATEGGYLTNRQIEAARIAMTRYIKRGGKVWINVYPDRPMTKHPAESRMGSGKGTPEWWIANIKPGRVLFELSGVPEDVAREAMRLAIHKLPMKARFISREGGDN |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S rRNA | a | 3086 | NA | GCAAAGUUGUGUAGUGCGAUCGGUGGAUGCCUUGGCACCAAGAGCCGAUGAAGGACGUUGUGACCUGCGAUAAGCCCUGGGGAGUUGGUGAGCGAGCUGUGAUCCGGGGGUGUCCGAAUGGGGAAACCUGGAAUGUCCGGAGUAGUGUCCGGUGGCCCUGCCCUGAAUGUAUAGGGGUGUGGGUGGUAACGCGGGGAAGUGAAACAUCUUAGUACCCGUAGGAAGAGAAAACAAGUGUGAUUCCGUGAGUAGUGGCGAGCGAAAGCGGAGGAGGCUAAACCGUGUGUGUGUUCAAGCCGGCAGGUGUUGCAUGUGCGGGGUUGUGGGGGCCUUGUGGUUCUGCUGCCGCAGGAUUGGCCAGUGAGAAAUGUUGCGUGAAGGUGAAGCGUCUGGGAAGGCGUACCGGAGUGGGUGAGAGUCCUGUAACUGUAAGCGUGGCACUGGUGUGGGGUUGCCCCGAGUAGCGUGGGACUCGUGGAAUUUCGCGUGAAUCUGGCGGGACCACCCGUCAAGCCUAAAUACUCCUUGGUGACCGAUAGUGGAUGAGUACCGUGAGGGAAGGGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUUCCUGAAACCGGUCGCAUGCAAGCCGUCAGAGCCUGUGUGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUUAGUGAUGCGUGGCGAGGUUAACCCGUGGUGGGGGAGUCGUAGCGAAAGCGAGUCCGAUAAGGGCGUGAGUCGCGUGUUCUAGACCCGAAGCGGUGUGAUCUAUCCAUGGCCAGGAUGAAGCGUCGGUAAGACGUCGUGGAGGUCCGAACCCACUUCAGUUGAAAAUGGAGGGGAUGAGUUGUGGAUAGGGGUGAAAGGCCAAUCAAACACCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUUGCGUGGUUCUUGUUGGAGGUAGAGCACUGGAUGGUCUAGGGGGCUUAUCGGCUUACCGAAAUCAGCCAAACUCCGAAUGCUGGCAAGUGUAGCGUGGCAGUGAGACGGCGGGUGAUAAGCUUCGUCGUCGAGAGGGAAACAGCCCAGAUCAUCAGCUAAGGCCCCUAAGUGGUGACUCAGUGGGAAAGGAUGUGGAGUUGCGUAGACAACCAGGAGGUUGGCUUGGAAGCAGCCAUCCUUGAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUCCGCGCCGAUAAUGUAGCGGGGCUUAAGUUAUCCGCCGAAGCUGUGGCAACCUGUGUGGUUGGGUAGGGGAGCGUCGUGUCAGUGGUGAAGCUGCCGGGUGACUGUGUGGUGGAGUUGAUGCGAGUGAGAAUGCAGGCAUGAGUAGCGUGUGACGGGUGGGAAUCCCGUCCGCCGAUUAUCCAAGGGUUCCAGGGUCAAGUUUGUCUGCCCUGGGUGAGUCGGGUCCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGGUAACCAGUUGAUAUUCUGGUACCGGCUUGUCACCGUCCGUGUCGAGGUGUGUGAUGCUAAGCAUGUGAGCUUGUCUUGGGAGUGUUUUUGAUGCUUCUGGGGUGGGUGAGUGUGUGAACCGAUCAUGUAGUAGGCAAGCUGCGGAGGGACGCAGUGAGGUAGCUCAUCCCCGGUGAUGGUUGUCCGGGGCUAAGUGUGUGGACUGUCUGGUAGGUAAAUCCGCUGGGCGUGAAGGUUGAGGCAUGAUGGGGAGCCCAUGGUUGUGGGUGAGUGAGUGAUCCUGUACUGUCGAGAAAAGCUUCGUGAGCGAGGUGGCGGGUCCGCCCGUACCCUAAACCGACACUGGUGGAUAGGUAGAGUAUACCGAGGCGAUCGAGUGAAUCGUGGUGAAGGAACUCGGCAAAAUGCCCCCGUAACUUUGGGAUAAGGGGGACCUGAGCUGUCGUGCACCCGUGCGGUGUGGUGGCGGUGAGGGGCGCAGAGUCCAGGGGGAAACGACUGUUUACCAAAAACACAGGUCCGUGCGAAGUCGUAAGACGAUGUAUACGGACUGACUCCUGCCCGGUGCUGGAAGGUUAAGGGGAACUGUGAGUGUAUGCGUAGCGGUGAACUUAAGCCCCAGUAAACGGCGGUGGUAACXAUAACCAUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGAGUAACGAUUUCCCUACUGUCUCCACCAUGAACUCGGUGAAAUUGCAUUACGAGUAAAGAUGCUCGUUACGCGCAGCAGGACGGAAAGACCCCGGGACCUUUACUAUAGUUUGGUAUUGGUGAUUGGGACGGUUUGUGUAGGAUAGGUGGGAGACGUUGAUGCGGCCACGCUAGUGGUGGUGGAGUCGUUGGUGAAAUACCACUCUGAUUGUUCUGGUUAUCUCACUGUGGACCGUGAUCCGGUUCAAGGACAGUGCCUGAUGGGUAGUUUGACUGGGGCGGUCGCCUCCUAAAGGGUAACGGAGGCGCCCAAAGGUUCCCUCAGCCUGGUUGGUAAUCAGGUGGUGAGUGUAAGUGCACAAGGGGGCUUGACUGUGAGACUGACAGGUCGAGCAGGGACGAAAGUCGGGACUAGUGAUCUGACGGUGGCUUGUGGAUGCGCCGUCACUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUGCCCGAGCGCUCAUAGCGACGGCAUGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGCUGCGCGCGGAGGAAUCUUGAGAAGGGCUGUCUUUAGUACGAGAGGACCGAGACGGACUGACCUCUGGUGUGCCAGUUGUUCUGCCAAGAGCAUGGCUGGUUGGCUACGUCGGGUUGUGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCACGCUUCAAGAUAAGGGUUCCCACAGGAGUGUUCCUGGUAAGGUCCCCGAGAGAUGAUCGGGUUGAUAGGCCAGACGUGGACGCAUCGUAAGGUGUGGAGCUGACUGGUACUAAUAGACCGAGGACUUUCAUUAACA |
| 5S rRNA | b | 120 | NA | UUUCCGGUGGCCAUAGUGGAAGGGAAACACCCGGUCCCAUUCCGAACCCGGUCGUUAAGCCUUCCAACGCUGAUGGUACUGCACGAGGGAUCGUGUGGGAGAGUAAGACGCUGCCGGAAU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-06-04 Deposition Author(s): Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.