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FASTA Sequence PDB Format mmCIF Format
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9BIH

Sars-cov-2 endoribonuclease nsp15 bound to dsrna with 1 nucleotide bulge

PDB DOI: 10.2210/pdb9bih/pdb

Classification: VIRAL PROTEIN
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-04-23
Deposition Author(s): Borgnia, M.J. , Butay, K.J. , Krahn, J.M. , Stanley, R.E. , Wright, Z.M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.24 Å

9bih
Literature

Sars-cov-2 endoribonuclease nsp15 bound to dsrna with 1 nucleotide bulge

Borgnia, M.J. , Butay, K.J. , Krahn, J.M. , Stanley, R.E. , Wright, Z.M.

Primary Citation of Related Structures: 9BIH


Proteins
Molecule Chains Sequence Length Organism Sequence
Uridylate-specific endoribonuclease nsp15 A 350 Severe Acute Respiratory Syndrome Coronavirus 2 SLEMSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEAIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQ
Uridylate-specific endoribonuclease nsp15 B 350 Severe Acute Respiratory Syndrome Coronavirus 2 SLEMSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEAIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQ
Uridylate-specific endoribonuclease nsp15 C 350 Severe Acute Respiratory Syndrome Coronavirus 2 SLEMSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEAIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQ
Uridylate-specific endoribonuclease nsp15 D 350 Severe Acute Respiratory Syndrome Coronavirus 2 SLEMSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEAIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQ
Uridylate-specific endoribonuclease nsp15 E 350 Severe Acute Respiratory Syndrome Coronavirus 2 SLEMSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEAIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQ
Uridylate-specific endoribonuclease nsp15 F 350 Severe Acute Respiratory Syndrome Coronavirus 2 SLEMSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEAIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (35-mer) g 35 NA UUUAGAUUUCAUCUAAACGAACAAACUAAAAUGUC
RNA (34-mer) h 34 NA GACAUUUUAGUUUGUUCGUUUGAUGAAAUCUAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-04-23
Deposition Author(s): Borgnia, M.J. , Butay, K.J. , Krahn, J.M. , Stanley, R.E. , Wright, Z.M.