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FASTA Sequence PDB Format mmCIF Format
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9BAQ

Cryoem structure of dim2-hp1-h3k9me3-dna complex

PDB DOI: 10.2210/pdb9baq/pdb

Classification: Transferase/DNA Binding Protein/DNA
Organism(s): Algoriphagus Machipongonensis

Deposited: 2024-04-04
Deposition Author(s): Shao, Z. , Song, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.79 Å

9baq
Literature

Cryoem structure of dim2-hp1-h3k9me3-dna complex

Shao, Z. , Song, J.

Primary Citation of Related Structures: 9BAQ


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA (cytosine-5-)-methyltransferase A 1244 Algoriphagus Machipongonensis GSMDSPDRSHGGMFIDVPAETMGFQEDYLDMFASVLSQGLAKEGDYAHHQPLPAGKEECLEPIAVATTITPSPDDPQLQLQLELEQQFQTESGLNGVDPAPAPESEDEADLPDGFSDESPDDDFVVQRSKHITVDLPVSTLINPRSTFQRIDENDNLVPPPQSTPERVAVEDLLKAAKAAGKNKEDYIEFELHDFNFYVNYAYHPQEMRPIQLVATKVLHDKYYFDGVLKYGNTKHYVTGMQVLELPVGNYGASLHSVKGQIWVRSKHNAKKEIYYLLKKPAFEYQRYYQPFLWIADLGKHVVDYCTRMVERKREVTLGCFKSDFIQWASKAHGKSKAFQNWRAQHPSDDFRTSVAANIGYIWKEINGVAGAKRAAGDQLFRELMIVKPGQYFRQEVPPGPVVTEGDRTVAATIVTPYIKECFGHMILGKVLRLAGEDAEKEKEVKLAKRLKIENKNATKADTKDDMKNDTATESLPTPLRSLPVQVLEATPIESDIVSIVSSDLPPSENNPPPLTNGSVKPKAKANPKPKPSTQPLHAAHVKYLSQELVNKIKVGDVISTPRDDSSNTDTKWKPTDTDDHRWFGLVQRVHTAKTKSSGRGLNSKSFDVIWFYRPEDTPCCAMKYKWRNELFLSNHCTCQEGHHARVKGNEVLAVHPVDWFGTPESNKGEFFVRQLYESEQRRWITLQKDHLTCYHNQPPKPPTAPYKPGDTVLATLSPSDKFSDPYEVVEYFTQGEKETAFVRLRKLLRRRKVDRQDAPANELVYTEDLVDVRAERIVGKCIMRCFRPDERVPSPYDRGGTGNMFFITHRQDHGRCVPLDTLPPTLRQGFNPLGNLGKPKLRGMDLYCGGGNFGRGLEEGGVVEMRWANDIWDKAIHTYMANTPDPNKTNPFLGSVDDLLRLALEGKFSDNVPRPGEVDFIAAGSPCPGFSLLTQDKKVLNQVKNQSLVASFASFVDFYRPKYGVLENVSGIVQTFVNRKQDVLSQLFCALVGMGYQAQLILGDAWAHGAPQSRERVFLYFAAPGLPLPDPPLPSHSHYRVKNRNIGFLCNGESYVQRSFIPTAFKFVSAGEGTADLPKIGDGKPDACVRFPDHRLASGITPYIRAQYACIPTHPYGMNFIKAWNNGNGVMSKSDRDLFPSEGKTRTSDASVGWKRLNPKTLFPTVTTTSNPSDARMGPGLHWDEDRPYTVQEMRRAQGYLDEEVLVGRTTDQWKLVGNSVSRHMALAIGLKFREAWLGTLYD
Heterochromatin protein one B 268 Algoriphagus Machipongonensis GSMPYDPSALSDEEAASSVELDTRSATSSSKKQSRDKKSVKYTIPEPEDFEDEEQNGDGADEGGEDDEEGDEEEEDVYVVEKILDHMLNDDNEPLFLVKWEGYEKKSDQTWEPEDTLIEGASERLKEYFTKIGGREKIFEASAAAQKIKKRGRPSSNSGTPQASSNKRSRKNGDHPLNSEEPQTAKNAAWKPPAGSWEEHIAQLDACEDEDTHKLMVYLTWKNGHKTQHTTDVIYKRCPQKMLQFYERHVRIIKRDPDSEDREGSVSQ
Heterochromatin protein one C 268 Algoriphagus Machipongonensis GSMPYDPSALSDEEAASSVELDTRSATSSSKKQSRDKKSVKYTIPEPEDFEDEEQNGDGADEGGEDDEEGDEEEEDVYVVEKILDHMLNDDNEPLFLVKWEGYEKKSDQTWEPEDTLIEGASERLKEYFTKIGGREKIFEASAAAQKIKKRGRPSSNSGTPQASSNKRSRKNGDHPLNSEEPQTAKNAAWKPPAGSWEEHIAQLDACEDEDTHKLMVYLTWKNGHKTQHTTDVIYKRCPQKMLQFYERHVRIIKRDPDSEDREGSVSQ
Histone H3.2 D 25 Algoriphagus Machipongonensis ARTKQTARKSTGGKAPRKQLATKAW
Histone H3.2 F 25 Algoriphagus Machipongonensis ARTKQTARKSTGGKAPRKQLATKAW

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*GP*TP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*TP*AP*GP*T)-3') g 18 NA AGTAGGAGGAGGAGTAGT
DNA (5'-D(*AP*CP*TP*AP*CP*T)-R(P*(PYO))-D(P*CP*TP*CP*CP*TP*CP*CP*TP*AP*CP*T)-3') h 18 NA ACTACTUCTCCTCCTACT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-04-04
Deposition Author(s): Shao, Z. , Song, J.