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FASTA Sequence PDB Format mmCIF Format
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9B5F

Ubiquitin e1-ub-e2 tetrahedral transthiolation intermediate mimic (doubly ub-loaded) - cluster 1 map and model (ub(a)/atp/mg)

PDB DOI: 10.2210/pdb9b5f/pdb

Classification: LIGASE
Organism(s): Hirudinaria Manillensis

Deposited: 2024-03-22
Deposition Author(s): Kochanczyk, T. , Lima, C.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.78 Å

9b5f
Literature

Ubiquitin e1-ub-e2 tetrahedral transthiolation intermediate mimic (doubly ub-loaded) - cluster 1 map and model (ub(a)/atp/mg)

Kochanczyk, T. , Lima, C.D.

Primary Citation of Related Structures: 9B5F


Proteins
Molecule Chains Sequence Length Organism Sequence
Ubiquitin-activating enzyme E1 1 A 1001 Hirudinaria Manillensis SNTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLTEDDIGVPRAKVTVSKLAELNQYVPVSVVDELSTEYLKNFKCVVVTETSLTKQLEINDFTHKNHIAYIAADSRGLFGSIFCDFGENFICTDTDGNEPLTGMIASITDDGVVTMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVEVKGPYTFSIGSVKDLGSAGYNGVFTQVKVPTKISFKSLRESLKDPEYVYPDFGKMMRPPQYHIAFQALSAFADAHEGSLPRPRNDIDAAEFFEFCKKIASTLQFDVELDEKLIKEISYQARGDLVAMSAFLGGAVAQEVLKATTSKFYPLKQYFYFDSLESLPSSVTISEETCKPRGCRYDGQIAVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTLGTKGNTQVVVPHLTESYGSSQDPPEKSFPICTLKNFPNRIEHTIAWARDLFEGLFKQPIDNVNMYLSSPNFLETSLKTSSNPREVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHFDFIVAAASLYAFNYGLKSETDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETAANKDKQELKSIADSLPPPSSLVGFRLTPAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIWDRYNLPDCTLQELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHLVLEICCDDANGEDVEVPFICIKL
Polyubiquitin B 76 Hirudinaria Manillensis MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Ubiquitin-conjugating enzyme E2 4 C 153 Hirudinaria Manillensis MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAIGGLVPR
Ubiquitin D 79 Hirudinaria Manillensis GSGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-03-22
Deposition Author(s): Kochanczyk, T. , Lima, C.D.