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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9AXW

Nanobody nbjri bound to yeast pdc1

PDB DOI: 10.2210/pdb9axw/pdb

Classification: IMMUNE SYSTEM
Organism(s): Saccharomyces Cerevisiae , Vicugna Pacos

Deposited: 2024-03-06
Deposition Author(s): Avalos, J.L. , Carrasco-Lopez, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.3 Å

9axw
Literature

Nanobody nbjri bound to yeast pdc1

Avalos, J.L. , Carrasco-Lopez, C.

Primary Citation of Related Structures: 9AXW


Proteins
Molecule Chains Sequence Length Organism Sequence
branched-chain-2-oxoacid decarboxylase AA1 573 Saccharomyces Cerevisiae , Vicugna Pacos MASSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAKQLEHHHHHH
branched-chain-2-oxoacid decarboxylase BA1 573 Saccharomyces Cerevisiae , Vicugna Pacos MASSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAKQLEHHHHHH
branched-chain-2-oxoacid decarboxylase CA1 573 Saccharomyces Cerevisiae , Vicugna Pacos MASSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAKQLEHHHHHH
branched-chain-2-oxoacid decarboxylase DA1 573 Saccharomyces Cerevisiae , Vicugna Pacos MASSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAKQLEHHHHHH
branched-chain-2-oxoacid decarboxylase EA1 573 Saccharomyces Cerevisiae , Vicugna Pacos MASSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAKQLEHHHHHH
branched-chain-2-oxoacid decarboxylase FA1 573 Saccharomyces Cerevisiae , Vicugna Pacos MASSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAKQLEHHHHHH
branched-chain-2-oxoacid decarboxylase GA1 573 Saccharomyces Cerevisiae , Vicugna Pacos MASSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAKQLEHHHHHH
branched-chain-2-oxoacid decarboxylase HA1 573 Saccharomyces Cerevisiae , Vicugna Pacos MASSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAKQLEHHHHHH
NbJRi I 152 Saccharomyces Cerevisiae , Vicugna Pacos MASAAQLQLVETGGGLVQTGGSLRLSCAASGGTVTRLTTAWFRQAPGKEREFVTAITWLEGGPYYADSVKGRFTISRDNAKNTLYLRMDSLNPEDSAVYYCAARKAGTLRYSASEYEYWGQGTQVTVSSEPKTPKPQPARHAAALEHHHHHH
NbJRi J 152 Saccharomyces Cerevisiae , Vicugna Pacos MASAAQLQLVETGGGLVQTGGSLRLSCAASGGTVTRLTTAWFRQAPGKEREFVTAITWLEGGPYYADSVKGRFTISRDNAKNTLYLRMDSLNPEDSAVYYCAARKAGTLRYSASEYEYWGQGTQVTVSSEPKTPKPQPARHAAALEHHHHHH
NbJRi K 152 Saccharomyces Cerevisiae , Vicugna Pacos MASAAQLQLVETGGGLVQTGGSLRLSCAASGGTVTRLTTAWFRQAPGKEREFVTAITWLEGGPYYADSVKGRFTISRDNAKNTLYLRMDSLNPEDSAVYYCAARKAGTLRYSASEYEYWGQGTQVTVSSEPKTPKPQPARHAAALEHHHHHH
NbJRi L 152 Saccharomyces Cerevisiae , Vicugna Pacos MASAAQLQLVETGGGLVQTGGSLRLSCAASGGTVTRLTTAWFRQAPGKEREFVTAITWLEGGPYYADSVKGRFTISRDNAKNTLYLRMDSLNPEDSAVYYCAARKAGTLRYSASEYEYWGQGTQVTVSSEPKTPKPQPARHAAALEHHHHHH
NbJRi N 152 Saccharomyces Cerevisiae , Vicugna Pacos MASAAQLQLVETGGGLVQTGGSLRLSCAASGGTVTRLTTAWFRQAPGKEREFVTAITWLEGGPYYADSVKGRFTISRDNAKNTLYLRMDSLNPEDSAVYYCAARKAGTLRYSASEYEYWGQGTQVTVSSEPKTPKPQPARHAAALEHHHHHH
NbJRi O 152 Saccharomyces Cerevisiae , Vicugna Pacos MASAAQLQLVETGGGLVQTGGSLRLSCAASGGTVTRLTTAWFRQAPGKEREFVTAITWLEGGPYYADSVKGRFTISRDNAKNTLYLRMDSLNPEDSAVYYCAARKAGTLRYSASEYEYWGQGTQVTVSSEPKTPKPQPARHAAALEHHHHHH
NbJRi P 152 Saccharomyces Cerevisiae , Vicugna Pacos MASAAQLQLVETGGGLVQTGGSLRLSCAASGGTVTRLTTAWFRQAPGKEREFVTAITWLEGGPYYADSVKGRFTISRDNAKNTLYLRMDSLNPEDSAVYYCAARKAGTLRYSASEYEYWGQGTQVTVSSEPKTPKPQPARHAAALEHHHHHH
NbJRi M 152 Saccharomyces Cerevisiae , Vicugna Pacos MASAAQLQLVETGGGLVQTGGSLRLSCAASGGTVTRLTTAWFRQAPGKEREFVTAITWLEGGPYYADSVKGRFTISRDNAKNTLYLRMDSLNPEDSAVYYCAARKAGTLRYSASEYEYWGQGTQVTVSSEPKTPKPQPARHAAALEHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-03-06
Deposition Author(s): Avalos, J.L. , Carrasco-Lopez, C.