9AXU
Non-translating s. pombe ribosome large subunit
PDB DOI: 10.2210/pdb9axu/pdb
Classification: RIBOSOME Organism(s): Conus Stercusmuscarum
Deposited: 2024-03-06 Deposition Author(s): Gemin, O. , Gluc, M. , Jomaa, A. , Mattei, S. , Purdy, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 1.94 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Large ribosomal subunit protein eL42 | 0 | 106 | Conus Stercusmuscarum | MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF |
| Large ribosomal subunit protein eL33A | R | 108 | Conus Stercusmuscarum | MPAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV |
| Large ribosomal subunit protein eL34B | S | 111 | Conus Stercusmuscarum | MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLKQMSQK |
| Large ribosomal subunit protein uL29 | T | 122 | Conus Stercusmuscarum | MALKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA |
| Large ribosomal subunit protein eL36B | U | 99 | Conus Stercusmuscarum | MAPGLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLAH |
| Large ribosomal subunit protein eL37B | V | 91 | Conus Stercusmuscarum | MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSGKPAAAVAASA |
| Large ribosomal subunit protein eL38A | W | 74 | Conus Stercusmuscarum | MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEVGKKA |
| Large ribosomal subunit protein eL39 | X | 51 | Conus Stercusmuscarum | MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI |
| Large ribosomal subunit protein eL28 | Y | 134 | Conus Stercusmuscarum | MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKTVA |
| Large ribosomal subunit protein eL15B | Z | 201 | Conus Stercusmuscarum | MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNSPQHATWLRHNTLSLRRYR |
| Large ribosomal subunit protein uL13A | A | 197 | Conus Stercusmuscarum | MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVNGKLAEFGY |
| Large ribosomal subunit protein eL43A | 1 | 94 | Conus Stercusmuscarum | MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIRRLREMVEV |
| Large ribosomal subunit protein uL22A | B | 187 | Conus Stercusmuscarum | MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDTVSRVSLKQGAKARNLAARKAITAA |
| Large ribosomal subunit protein eL18B | C | 187 | Conus Stercusmuscarum | MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFGPHKHKAPYVRSEGRKFERARGRRKSRAFKV |
| Large ribosomal subunit protein eL19B | D | 193 | Conus Stercusmuscarum | MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEKREQIYTAAEKIEE |
| Large ribosomal subunit protein eL20A | E | 176 | Conus Stercusmuscarum | MALKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY |
| Large ribosomal subunit protein eL21B | F | 160 | Conus Stercusmuscarum | MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYDTTI |
| Large ribosomal subunit protein eL22 | G | 117 | Conus Stercusmuscarum | MVKKNTKVSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYYNVVVGNDEEEQ |
| Large ribosomal subunit protein uL14B | H | 139 | Conus Stercusmuscarum | MSRGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV |
| Large ribosomal subunit protein eL24B | I | 149 | Conus Stercusmuscarum | MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKRAASESEKKAIKAKSAASSARGQAIKNAKVAARR |
| Large ribosomal subunit protein uL23A | J | 141 | Conus Stercusmuscarum | MSVAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL |
| Large ribosomal subunit protein uL24 | K | 126 | Conus Stercusmuscarum | MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRGSNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRKGGKVE |
| Large ribosomal subunit protein eL27A | L | 136 | Conus Stercusmuscarum | MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF |
| Large ribosomal subunit protein uL15B | M | 148 | Conus Stercusmuscarum | MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQAGGVVELIA |
| Large ribosomal subunit protein uL2C | N | 253 | Conus Stercusmuscarum | MGRVIRAQRKSGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAAVEN |
| Large ribosomal subunit protein uL3A | O | 388 | Conus Stercusmuscarum | MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKDVA |
| Large ribosomal subunit protein uL4A | P | 363 | Conus Stercusmuscarum | MAAARPTVSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKLNTGKTPKAAGEKFLTVLHEN |
| Large ribosomal subunit protein uL18B | Q | 294 | Conus Stercusmuscarum | MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAKVIEAGRA |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 28S ribosomal RNA | 2 | 3498 | NA | AUUUGACCUCAAAUCAGGUAGGACUACGCGCUGAACUUAAGCAUAUCAAUAAGCGCAGGAAAAGAAAAUAACCAUGAUUCCCUCAGUAACGGCGAGUGAAGCGGGAAAAGCUCAAAUUUGAAAUCUGGCAACAUUUCUUUUGUUGUCCGAGUUGUAAUUUCAAGAAGCUGCUUUGAGUGUAGACGAUCGGUCUAAGUUCCUUGGAACAGGACGUCAGAGAGGGUGAGAACCCCGUCUUUGGUCGAUUGGAUAUGCCAUAUAAAGCGCUUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAAUGGGUGGUAAAUUUCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUAGAGUGAUCGAAAGAUGAAAAGAACUUUGAAAAGAGAGUUAAAUAGUACGUGAAAUUGCUGAAAGGGAAGCAUUGGAAAUCAGUCUUACCUGGGUGAGAUCAGUAGUCUCUUCGCGAGACUAUGCACUCUGAACCUGUGGUAGGUCAGCAUCAGUUUUCGGGGGCGGAAAAAGAAUAAGGGAAGGUGGCUUUCCGGGUUCUGCCUGGGGAGUGUUUAUAGCCCUUGUUGUAAUACGUCCACUGGGGACUGAGGACUGCGGCUUCGUGCCAAGGAUGCUGACAUAAUGGUUUUCAAUGGCCCGUCUUGAAACACGGACCAAGGAGUCUAGCAUCUAUGCGAGUGUUUGGGUGAUGAAAACCCAUCCGCGAAAUGAAAGUGAAUGCAGGUGGGAACGCCCUUGUGGCGUGCACCAUCGACCGACCCGGAAGUUUGUCAAUGGAAGGGUUUGAGUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCCAGAGGAAACUCUGGUGGAGGCUCGUAGAGAUUCUGACGUGCAAAUCGAUCUUCAAAUUUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCUCAGGAUAGCAGAAACUCAGAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUCUUGGGGAAGGAAUUUCCUCAACCUAUUCUCAAACUUUAAAUAUGUAAGACGCCCUUGUCGCUUAAUUGGACGUGGGCCAUCGAAUGAGAGUUUCUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGAACGUGAGGUUAAGGUGCCGGAAUGUACGCUCAUCAGACACCAGAAAAGGUGUUAGUUCAUCUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUUAAGCGUACUACCCAUACCUCACCGUCUGGGUUAGCUUUGAGAAGCUCAGACGAGUAGGCAGGCGUGGAGGUUUGUGACGAAGCCUUGGGCGUGAGCCUGGGUCGAACAGCCUCUAGUGCAGAUCUUGGUGGAAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCAUGUGAACAGCAGUUGGACAUGGGUUAGUCGAUCCUAAGAGAUAGGGAAGCUCCGUAUGAAAGUUGCACGAUUUUUCGUGCCUCCUAUCGAAAGGGAAUCCGGUUAAUAUUCCGGAACCAGAAGGUGGAAUCAACACGGCAACGUAAAUGAAGUUGGAGACGUCGGCGGGAGCCCUGGGAAGAGUUCUCUUUUCUUUUUAACAAACCAUUGAACUACCCUGAAAUCGGUUUAUCCGGAGCUAGGGUAUGGUGUUUGGAAGAGUUCAGCGCCUCAUGCUGAAUCCGGUGCGCUCUCGACGGCCCUUGAAAAUCCAACGGAAGAAUGGACCUUCGGGUCCUUGUUUUCACAUCUGGUCGUACUCAUAACCGCAGCAGGUCUCCAAGGUGAACAGCCUCUAGUUGAUAGAACAAUGUAGAUAAGGGAAGUCGGCAAAAUGGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAGGGUUGGGUACGUUGGGCCUUGGAACCUGAACGGUUGCUGGACUGAGCGUGGACCGAUGUCUUUUCUCGCCUUUCGGGGUGAGAAGGGAUGUUGGACCUGCUUGGACCUUGGCGGCCGGGAAGUCCUUGGUCGGGCUUUUCUCCUUCUCGGGGAUUAUGCUCUUACUGGCGUACGUUUAACAACCAACUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGCCAGAAAGUGGUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAACUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCUGGGGAACGGGCCAGGCAAAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGGAUAAGUGGGAGUAUGUUUCGGCAUACGCCGGUGAAAUACCACUACCUUUAUCGUUUCUUUACUUAAUCAAUGAAGCGGAAUUGGGAUUUAUUUCCCAUAUUCUAGCGUUAAAGUUUCUUCGCGAACUGAUCCGCGUUGAUGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAAAGAUAACGCAGGUGUCCUAAGGGGGACUCAUCGAGAACAGAAAUCUCGAGUAGAAUAAAAGGGUAAAAGUCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUCGAUCCUUUGUUCCCUCGAAAUUUGAGGACAGAGGUGCCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGAUUCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAGUGUCGUCGCAAUGGUAAUUCAACUUAGUACGAGAGGAACCGUUGAUUCAGAUCAUUGGUAUUUGCGGCUGCCUGACAAGGCAAUGCCGCGGAGCUAUCAUCUGCCGGAUAACGGCUGAACGCCUCUAAGCCAGAAUCCGUGCCAGAAAGCGACGAUUUUUUGGUCCGCAUGAUUUAUAUGUAUAAAAAUAGAGGUAGGACUUGUUCCUACUCUCCUGUAUCGUAGAAGAUGGGCGAUGGUUGAUGAAACGGAAGUGUUUUAUUGACUUGUCCAUGAAAUUCCAUUGAAAUCUUGUGCGGAAUCGAAUCCAUUGCAUACGACUUUAAUGUGGAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUACGAUCUGCUGAGAUUAAGCCUUUGUUCCCAAGAUUUGU |
| 5S ribosomal RNA | 3 | 246 | NA | UUAAACGUCUACGGCCAUACCUAGGCGAAAACACCAGUUCCCGUCCGAUCACUGCAGUUAAGCGUCUGAGGGCCUCGUUAGUACUAUGGUUGGAGACAACAUGGGAAUCCGGGGUGCUGUAGGCUUCCUUUUAUUCUUUUUGCUUUUUGUUUGAGCUCAUUUGGGAAUAAUAAUCAUUUACCUUGAUUCGUACUUAUUCAUUUCAAUACCUUUGCACAUAAUAUUAUUGUGUACUAUGAAUGAUAU |
| 5.8S ribosomal RNA | 4 | 165 | NA | AUUAUUUAAAACUUUCAGCAACGGAUCUCUUGGCUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCUUUGGGUUCUACCAAAGGCAUGCCUGUUUGAGUGUCAUU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-03-06 Deposition Author(s): Gemin, O. , Gluc, M. , Jomaa, A. , Mattei, S. , Purdy, M.