8ZOE
Structure of the canthaxanthin mutant psi-4vcpi supercomplex in nannochloropsis oceanica
PDB DOI: 10.2210/pdb8zoe/pdb
Classification: PHOTOSYNTHESIS Organism(s): Nannochloropsis Oceanica Strain Imet1
Deposited: 2024-05-28 Deposition Author(s): Li, Z.H. , Shen, J.R. , Shen, L.L. , Wang, W.D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.02 Å
Structure of the canthaxanthin mutant psi-4vcpi supercomplex in nannochloropsis oceanica
Li, Z.H. , Shen, J.R. , Shen, L.L. , Wang, W.D.
Primary Citation of Related Structures: 8ZOE
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| VCPI-9 | 9 | 232 | Nannochloropsis Oceanica Strain Imet1 | MKTAAILAVLACAANAFVFPTPKVSQTVVRGTPFDTVSKDELAVENKAMAGKSVFERAMADFNGRYPAVAALGLGPSAKAERWNGRHAMFGWIVLLATGYAQAHGLLPEGGMDAKEWGTWVIVSTTNGEQVTIPAARAAIAIGHLHFGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKEAEMLNGRVAMLGLVALVAVSAATGQDILSVIDQGLGGLLLKA |
| PsaR | H | 128 | Nannochloropsis Oceanica Strain Imet1 | MKTFCILLALVALFNFSNAFMPKAPVHTARPVVARGRTMKMMEESTYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMNKA |
| Photosystem I reaction center subunit VIII | I | 45 | Nannochloropsis Oceanica Strain Imet1 | MSLDLLPSFFVPLVGLVLPLFSIIGLFLYIEKENREVFDPTTYKF |
| Photosystem I reaction center subunit IX | J | 41 | Nannochloropsis Oceanica Strain Imet1 | MKDFLKYLSTAPVLLTAWLTFTAGFVIEINRFYPDALTFPF |
| PSI subunit V | L | 172 | Nannochloropsis Oceanica Strain Imet1 | MVSFIKPYRQDPFVGHLATPITTSAFTRAYLKVLPAYRPGLTPLSRGAEIGFTHGYFLIGPFYTYGPLRSVEFSLTSLAAGLLAAITLLLILTVGLSIYGQVTYDVYDNALIVKLVRQMVGSERTQDLPQIKGTSELDTVLGWQKFSEGFFSGGLIGSIVAAVGIALYSTYL |
| PsaM | M | 30 | Nannochloropsis Oceanica Strain Imet1 | MIYDSQVYIALVIAVVASVLAIRLGATLYN |
| PsaS | G | 55 | Nannochloropsis Oceanica Strain Imet1 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Photosystem I iron-sulfur center | C | 81 | Nannochloropsis Oceanica Strain Imet1 | MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCETACPTDFLSVRVYLGGETTRSLGLAY |
| VCPI-8 | 8 | 200 | Nannochloropsis Oceanica Strain Imet1 | MKVTAVLSLLAAPLLASAFIAPAPKATRARGVMSMAQSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS |
| VCPI-7 | 7 | 202 | Nannochloropsis Oceanica Strain Imet1 | MKLLSFACLLGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPYM |
| VCPI-1 | 1 | 208 | Nannochloropsis Oceanica Strain Imet1 | MVGIHKTLLVAAVTMASVSAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITGQAALEQITAGNTGVFSGLGK |
| Photosystem I P700 chlorophyll a apoprotein A1 | A | 745 | Nannochloropsis Oceanica Strain Imet1 | MSTTRKSTIVDFNPVETSFEKWAKPGQFSRTLAKGPKTTTWIWNLHADAHDFDIQTNSLQEVSRKIFSAHFGQLAVIFLWLSGMHFHGAYFSNYSAWLTNPTSTKPSAQIVWPIVGQEVLNADVGGNFQGIQITSGFFQLWRAEGITSEVELYWTAVGGLVASFLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSLSWAGHQIHIALPINKLLDLGVSPEEIPLPYEFILNRDLIAQLYPSFNKGLTPFFTLNWGEYSDFLTFKGGLNPVTGGLWLTDTAHHHLAIAVLFIVAGHMYKTNWFLGHSIKTILEAHKGPFTGEGHKGLYEVLTTSWHAQLAINLALFGSLSIIVAHHMYAMPPYPYIAIDYPTQLSLFTHHVWIGGFCIVGGAAHGAIFFVRDYNAANNYNNLIDRVIRHRDAIISHLNWVCIFLGCHSFGLYVHNDTMRALGRSQDLFSDNAIALKPIFAQFIQNLHTLAPGSTAPNALTTVSYAFGGDVISVGSKIAMMPISLGTADFLVHHIHAFTIHVTVLILLKGVLYSRNSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISIVIFHFSWKMQSDVWGTVSPTGAVSHITGGNFAQSSITINGWLRDFLWSQAAQVVQSYGSSLSAYGLIFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPSIQPRALSITQGRAVGVAHYLLGGIGTTWAFFLARIISVG |
| Photosystem I P700 chlorophyll a apoprotein A2 | B | 737 | Nannochloropsis Oceanica Strain Imet1 | MVYKFPKFSKALAEDPSTRRIWYGIATAHDFESHDAMTESKLYQKIFASHFGHIAIIFLWTAGNLFHVAWQGNFEAWILNPLKVRPIAHAIWDPHFGQAAYKAFLKTSSPANLALSGVYEWWYTIGMRTNNDLYQGSFFLILLSSLLLFAGWLHLQPSFRPSLDWFKANEYRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGIHVGWDNFLTVLPHPEGLTPFFSGNWKAYAQNPDTASHIFGSGEGSGTAILTFLGGFHPQTKSLWLTDMAHHHLAIAVLFIVAGHMYRTNWLIGHQMKLILEAHRPPGGRLGIGHIGLYETITNSLHFQLGLALAALGVATSLTAQHMYALPPYAFLASNFPTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPAVNTRNGEKNVLARMLEHKEAIISHLSWVSLFLGFHTLGIYVHNDVVVAFGQPEKQILVEPLFAEWIQAASGKTLYNFDLLLASSNSPASVASSQLWLPGWLSAINDGKNSLFLPIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHLTLWQGNQVQFNESSNYIMGWLRDYLWLNSSPLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETIVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFTIGYVLTYAAFVIASTIGKLGY |
| Photosystem I reaction center subunit II | D | 136 | Nannochloropsis Oceanica Strain Imet1 | MNLKLKQSDFPKFEGSTGGWLSAAKNEEKYVIIWTSKDASLFEMPTGGTAKMNAGNNVAYFARKEQCLALGSQLRGFKITNYKIFRIYPPLDITLLHPFDGVFPEKVNQGRSPVGKRDASIGGNPNPASLKFQSNT |
| Photosystem I reaction center subunit IV | E | 67 | Nannochloropsis Oceanica Strain Imet1 | MIQKGSTVRILRKESYWYNESGTVVVVDQSKVRYPVLVRFTKVNYAGTNTNNFGLNEVEEVVTKKSS |
| Photosystem I reaction center subunit III | F | 185 | Nannochloropsis Oceanica Strain Imet1 | MTKIVKFAFLPLLTFLGLPMISNADIGGLNPCKDSEVFQKRLAKTVKKLENRLKKYEEGTPPQIAIQQQITQTKQRFTRYADSNLLCGNDGLPHLITDGRWSHGSEFLLPSILFLYISGWIGWVGRKYIRTVGQTSNPTEKEIIIDVPLAISIMTSGFLWPFAAWQEFLSGDLIASDETITTSPK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-05-28 Deposition Author(s): Li, Z.H. , Shen, J.R. , Shen, L.L. , Wang, W.D.