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FASTA Sequence PDB Format mmCIF Format
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8ZOB

Structure of the wild-type psi-5vcpi supercomplex in nannochloropsis oceanica

PDB DOI: 10.2210/pdb8zob/pdb

Classification: PHOTOSYNTHESIS
Organism(s): Nannochloropsis Oceanica Strain Imet1

Deposited: 2024-05-28
Deposition Author(s): Li, Z.H. , Shen, J.R. , Shen, L.L. , Wang, W.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.88 Å

Literature

Structure of the wild-type psi-5vcpi supercomplex in nannochloropsis oceanica

Li, Z.H. , Shen, J.R. , Shen, L.L. , Wang, W.D.

Primary Citation of Related Structures: 8ZOB


Proteins
Molecule Chains Sequence Length Organism Sequence
VCPI-5 5 244 Nannochloropsis Oceanica Strain Imet1 MFRKLALALLCSSAVAFQVPAPLTRGSVRLHAEGKPAAPPAAAPPAAAPAAAAPAAAAPAAAAVKPPPPPPPPKVFSKSVPFLLKPAGLDGMVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS
Photosystem I reaction center subunit III F 185 Nannochloropsis Oceanica Strain Imet1 MTKIVKFAFLPLLTFLGLPMISNADIGGLNPCKDSEVFQKRLAKTVKKLENRLKKYEEGTPPQIAIQQQITQTKQRFTRYADSNLLCGNDGLPHLITDGRWSHGSEFLLPSILFLYISGWIGWVGRKYIRTVGQTSNPTEKEIIIDVPLAISIMTSGFLWPFAAWQEFLSGDLIASDETITTSPK
Photosystem I reaction center subunit VIII I 45 Nannochloropsis Oceanica Strain Imet1 MSLDLLPSFFVPLVGLVLPLFSIIGLFLYIEKENREVFDPTTYKF
Photosystem I reaction center subunit IX J 41 Nannochloropsis Oceanica Strain Imet1 MKDFLKYLSTAPVLLTAWLTFTAGFVIEINRFYPDALTFPF
PSI subunit V L 172 Nannochloropsis Oceanica Strain Imet1 MVSFIKPYRQDPFVGHLATPITTSAFTRAYLKVLPAYRPGLTPLSRGAEIGFTHGYFLIGPFYTYGPLRSVEFSLTSLAAGLLAAITLLLILTVGLSIYGQVTYDVYDNALIVKLVRQMVGSERTQDLPQIKGTSELDTVLGWQKFSEGFFSGGLIGSIVAAVGIALYSTYL
PsaM M 30 Nannochloropsis Oceanica Strain Imet1 MIYDSQVYIALVIAVVASVLAIRLGATLYN
PsaS G 55 Nannochloropsis Oceanica Strain Imet1 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Photosystem I iron-sulfur center C 81 Nannochloropsis Oceanica Strain Imet1 MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCETACPTDFLSVRVYLGGETTRSLGLAY
VCPI-4 4 202 Nannochloropsis Oceanica Strain Imet1 MKLLSFACLLGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPYM
VCPI-3 3 220 Nannochloropsis Oceanica Strain Imet1 MKISFALAALLPCAAAFVAPAIPSVTSSTGTAAARGRTVMMAERSKSLPFLMKPKNLDGSMAGDVGFDPLGLSEINDVGVDLYWLREAELKHCRLGMMAAAGILFVEILGPAPGFPAGKSQMDVFWKVYAEKPSLIGASLAAIAILEVISGVATTQGRQNGDRAPGDYNFDPLGFGKDPAKFKDLQLKEVKNGRLAMIAAAGMILQGVSTHQGALENLSG
VCPI-2 2 223 Nannochloropsis Oceanica Strain Imet1 MRSITIVLAATAALSSAFVMPSTPKAPATQLSVKSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKGSDRAAGEFSFDPLGLGKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPYYQ
VCPI-1 1 208 Nannochloropsis Oceanica Strain Imet1 MVGIHKTLLVAAVTMASVSAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITGQAALEQITAGNTGVFSGLGK
Photosystem I P700 chlorophyll a apoprotein A1 A 745 Nannochloropsis Oceanica Strain Imet1 MSTTRKSTIVDFNPVETSFEKWAKPGQFSRTLAKGPKTTTWIWNLHADAHDFDIQTNSLQEVSRKIFSAHFGQLAVIFLWLSGMHFHGAYFSNYSAWLTNPTSTKPSAQIVWPIVGQEVLNADVGGNFQGIQITSGFFQLWRAEGITSEVELYWTAVGGLVASFLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSLSWAGHQIHIALPINKLLDLGVSPEEIPLPYEFILNRDLIAQLYPSFNKGLTPFFTLNWGEYSDFLTFKGGLNPVTGGLWLTDTAHHHLAIAVLFIVAGHMYKTNWFLGHSIKTILEAHKGPFTGEGHKGLYEVLTTSWHAQLAINLALFGSLSIIVAHHMYAMPPYPYIAIDYPTQLSLFTHHVWIGGFCIVGGAAHGAIFFVRDYNAANNYNNLIDRVIRHRDAIISHLNWVCIFLGCHSFGLYVHNDTMRALGRSQDLFSDNAIALKPIFAQFIQNLHTLAPGSTAPNALTTVSYAFGGDVISVGSKIAMMPISLGTADFLVHHIHAFTIHVTVLILLKGVLYSRNSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISIVIFHFSWKMQSDVWGTVSPTGAVSHITGGNFAQSSITINGWLRDFLWSQAAQVVQSYGSSLSAYGLIFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPSIQPRALSITQGRAVGVAHYLLGGIGTTWAFFLARIISVG
Photosystem I P700 chlorophyll a apoprotein A2 B 737 Nannochloropsis Oceanica Strain Imet1 MVYKFPKFSKALAEDPSTRRIWYGIATAHDFESHDAMTESKLYQKIFASHFGHIAIIFLWTAGNLFHVAWQGNFEAWILNPLKVRPIAHAIWDPHFGQAAYKAFLKTSSPANLALSGVYEWWYTIGMRTNNDLYQGSFFLILLSSLLLFAGWLHLQPSFRPSLDWFKANEYRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGIHVGWDNFLTVLPHPEGLTPFFSGNWKAYAQNPDTASHIFGSGEGSGTAILTFLGGFHPQTKSLWLTDMAHHHLAIAVLFIVAGHMYRTNWLIGHQMKLILEAHRPPGGRLGIGHIGLYETITNSLHFQLGLALAALGVATSLTAQHMYALPPYAFLASNFPTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPAVNTRNGEKNVLARMLEHKEAIISHLSWVSLFLGFHTLGIYVHNDVVVAFGQPEKQILVEPLFAEWIQAASGKTLYNFDLLLASSNSPASVASSQLWLPGWLSAINDGKNSLFLPIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHLTLWQGNQVQFNESSNYIMGWLRDYLWLNSSPLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETIVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFTIGYVLTYAAFVIASTIGKLGY
Photosystem I reaction center subunit II D 136 Nannochloropsis Oceanica Strain Imet1 MNLKLKQSDFPKFEGSTGGWLSAAKNEEKYVIIWTSKDASLFEMPTGGTAKMNAGNNVAYFARKEQCLALGSQLRGFKITNYKIFRIYPPLDITLLHPFDGVFPEKVNQGRSPVGKRDASIGGNPNPASLKFQSNT
Photosystem I reaction center subunit IV E 67 Nannochloropsis Oceanica Strain Imet1 MIQKGSTVRILRKESYWYNESGTVVVVDQSKVRYPVLVRFTKVNYAGTNTNNFGLNEVEEVVTKKSS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-28
Deposition Author(s): Li, Z.H. , Shen, J.R. , Shen, L.L. , Wang, W.D.