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8ZEF

Crystal structure of staphylococcus aureus ding protein in complex with ssdna and ca2+

PDB DOI: 10.2210/pdb8zef/pdb

Classification: HYDROLASE/DNA
Organism(s): Staphylococcus Aureus (Strain Nctc 8325 / Ps 47) , Synthetic Construct

Deposited: 2024-05-06
Deposition Author(s): Cheng, K. , Gao, T. , Hao, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.21 Å

8zef
Literature

Crystal structure of staphylococcus aureus ding protein in complex with ssdna and ca2+

Cheng, K. , Gao, T. , Hao, W.

Primary Citation of Related Structures: 8ZEF


Proteins
Molecule Chains Sequence Length Organism Sequence
3'-5' exonuclease DinG A 897 Staphylococcus Aureus (Strain Nctc 8325 / Ps 47) , Synthetic Construct MGMATYAVVDLETTGNQLDFDDIIQIGITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEENMLQQAPYFNQVAQEIYDKIKDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQYDAKPLDKFYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYRKAVDQLGLTYRPQQLYLAETILDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAMNEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNILKMQLLIWITETPSGDIQELNLKGGQKMYFDQKIETYVPARHDVHYYNFIKRNAQNIQIGITNHAHLIHSDVENSIYQLFDDCIVDEAHRLPDYALNQVTNELSYADIKYQLGLIGKNENEKLLKAIDQLEKQRILEKLDIAPIDIFGLKASMNEIHELNEQLFSTIFTIINDSDVYDDDIHRFHNVFTFETKDILKDLHAIIDKLNKTLEIFNGISHKTVKSLRKQLLYLKDKFKNIEQSLKAGHTSFISIKNLSQKSTIRLYVKDYAVKDVLTKQVLEKFKSLIFISGTLKFNHSFEAFKQLFNKDVHFNTFEVNTSLQSAKNTSVFIPSDVASYQYKNIDEYVASIVSYIIEYTTITSSKCLVLFTSYKMMHMVQDMLNELPEFEDYVVLTQQQNQNYKIVQQFNNFDKAILLGTSTFFEGFDFQANGIKCVMIAKLPFMNKHNAKYWLMDSEFTSTFKEYVLPDAVTRFRQGLGRLIRNENDRGIIVSFDDRLINSNYKNFFEQTLENYRQKKGDIQQFGKLLRQIQKKKK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*TP*TP*T)-3') b 4 NA TTTT
DNA (5'-D(*TP*TP*TP*TP*TP*TP*T)-3') c 7 NA TTTTTTT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-05-06
Deposition Author(s): Cheng, K. , Gao, T. , Hao, W.