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8YVA
Crystal structure of caenorhabditis elegans zim-2 zf1-2-ctd domain in complex with chromosome v pairing center
PDB DOI: 10.2210/pdb8yva/pdb
Classification: DNA BINDING PROTEIN Organism(s): Human Herpesvirus 6B (Strain Hst) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2024-03-28 Deposition Author(s): Li, F.D. , Li, M.L.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.8 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| C2H2-type domain-containing protein | A | 124 | Human Herpesvirus 6B (Strain Hst) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | SHMSFAFPLVQSPNKQKEEMNKVHNIKCHFDNCNRKIHWKIRYGKLRLVDHALSHQEEKSIDCQKCEYSCQTTRQMRYHYKKIHANLKMEGFGILNIPLQNTKFSDVWNKCFGDQLKTIGPVRK |
| C2H2-type domain-containing protein | B | 124 | Human Herpesvirus 6B (Strain Hst) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | SHMSFAFPLVQSPNKQKEEMNKVHNIKCHFDNCNRKIHWKIRYGKLRLVDHALSHQEEKSIDCQKCEYSCQTTRQMRYHYKKIHANLKMEGFGILNIPLQNTKFSDVWNKCFGDQLKTIGPVRK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*TP*TP*GP*GP*GP*CP*GP*CP*TP*GP*CP*T)-3') | c | 12 | NA | TTGGGCGCTGCT |
| DNA (5'-D(*TP*TP*GP*GP*GP*CP*GP*CP*TP*GP*CP*T)-3') | e | 12 | NA | TTGGGCGCTGCT |
| DNA (5'-D(*AP*GP*CP*AP*GP*CP*GP*CP*CP*CP*AP*A)-3') | d | 12 | NA | AGCAGCGCCCAA |
| DNA (5'-D(*AP*GP*CP*AP*GP*CP*GP*CP*CP*CP*AP*A)-3') | f | 12 | NA | AGCAGCGCCCAA |
Experimental Data
Method: X-RAY DIFFRACTION