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FASTA Sequence PDB Format mmCIF Format
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8Y1K

The cryo-em structure of tdpab in complex with amppnp and pt-dna

PDB DOI: 10.2210/pdb8y1k/pdb

Classification: TRANSLOCASE/DNA
Organism(s): Thermus Antranikianii Dsm 12462 , Synthetic Construct

Deposited: 2024-01-25
Deposition Author(s): Chen, T.A. , Qian, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

8y1k
Literature

The cryo-em structure of tdpab in complex with amppnp and pt-dna

Chen, T.A. , Qian, T.

Primary Citation of Related Structures: 8Y1K


Proteins
Molecule Chains Sequence Length Organism Sequence
TdpA F 586 Thermus Antranikianii Dsm 12462 , Synthetic Construct MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA A 586 Thermus Antranikianii Dsm 12462 , Synthetic Construct MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA B 586 Thermus Antranikianii Dsm 12462 , Synthetic Construct MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA E 586 Thermus Antranikianii Dsm 12462 , Synthetic Construct MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA D 586 Thermus Antranikianii Dsm 12462 , Synthetic Construct MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA C 586 Thermus Antranikianii Dsm 12462 , Synthetic Construct MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpB H 375 Thermus Antranikianii Dsm 12462 , Synthetic Construct MPYAGEGSNPLGLKDFLDDLRLDHYQDLLRELDELYQKLKQERQVPLHGDGEAYPLLTLTVDGGEGRAFEELPLLSFGLVRVAAVGVKGFRLPSIAHLLPGYEVLRDPKGYLEGLLERSEESPAADALKTFFRATGISLEDLGEYYTKDLRAFMGIFRDVLEWAYLVWGVEKVLQESYKDYLFIKDGRLAQLGVRESFRSKLQNYFARKHLLLAGVTKRSRLLAEGLTSLVMARLFAEARGTFVLQVPQELMEKAYRYERQWNADLEGAFVMGRRYVARLLEDTFRPQEGVAIFDLPPYLGEEDAVKVARSLRAHRSVLYGGSVGTVVEAHGRASVARSIPRRMEEEILARFRKAFGEDLAKKLTEWLRLADRED
TdpB G 375 Thermus Antranikianii Dsm 12462 , Synthetic Construct MPYAGEGSNPLGLKDFLDDLRLDHYQDLLRELDELYQKLKQERQVPLHGDGEAYPLLTLTVDGGEGRAFEELPLLSFGLVRVAAVGVKGFRLPSIAHLLPGYEVLRDPKGYLEGLLERSEESPAADALKTFFRATGISLEDLGEYYTKDLRAFMGIFRDVLEWAYLVWGVEKVLQESYKDYLFIKDGRLAQLGVRESFRSKLQNYFARKHLLLAGVTKRSRLLAEGLTSLVMARLFAEARGTFVLQVPQELMEKAYRYERQWNADLEGAFVMGRRYVARLLEDTFRPQEGVAIFDLPPYLGEEDAVKVARSLRAHRSVLYGGSVGTVVEAHGRASVARSIPRRMEEEILARFRKAFGEDLAKKLTEWLRLADRED

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*GP*CP*CP*CP*TP*TP*TP*TP*GP*CP*AP*A)-3') i 12 NA GCCCTTTTGCAA
DNA (5'-D(P*TP*TP*GP*CP*AP*AP*AP*AP*GP*GP*GP*C)-3') j 12 NA TTGCAAAAGGGC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-01-25
Deposition Author(s): Chen, T.A. , Qian, T.