8XR6
Cryo-em structure of cryptophyte photosystem ii
PDB DOI: 10.2210/pdb8xr6/pdb
Classification: PHOTOSYNTHESIS Organism(s): Chroomonas Placoidea
Deposited: 2024-01-06 Deposition Author(s): Li, K. , Liu, L.N. , Zhang, Y.Z. , Zhao, L.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.53 Å
Cryo-em structure of cryptophyte photosystem ii
Li, K. , Liu, L.N. , Zhang, Y.Z. , Zhao, L.S.
Primary Citation of Related Structures: 8XR6
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 | A | 360 | Chroomonas Placoidea | MTATLERRESASAWERFCSWITSTDNRLYIGWFGVLMIPTLLTATTVYIIAFVAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSASIGIHFYPIWEAASLDEWLYNGGPYQLIVDHFLLGVCGWIGREWEFSYRLGMRPWISVAFTAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVVGIWFTALGVMTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGMEVMHERNAHNFPLDLAAGESLPVALTAPAVNG |
| Photosystem II D2 protein | D | 351 | Chroomonas Placoidea | MTIAIGQEEGRGWFDLIDDWLKRDRFVFVGWSGLLLFPTSYLSIGGWFTGTTFVTSWYTHGLASSYLEGCNFFTAAVSTPANSMGHSLLLLWGPEAQGDFTRWCQIGGLWAFCALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPIAIFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFIQGFHNFTLNPFHMMGVAGILGAALLCAIHGATVQNTIFEDGDAANTFRAFTPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPLAGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRSWMAAQDQPHENFIFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 84 | Chroomonas Placoidea | MSGGSTGERPFSDIITSIRYWIIHSITIPALYVAGWLFVSTGLAYDIFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL |
| Cytochrome b559 subunit beta | F | 42 | Chroomonas Placoidea | MSKIQQPVSYPIFTFRWLAIHGLAVPTVFFLGAITSMQFIQR |
| Photosystem II reaction center protein H | H | 67 | Chroomonas Placoidea | MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGFVMLLFFLFLLIILQIYNSSLIIENVDVDWASLGS |
| Photosystem II reaction center protein I | I | 38 | Chroomonas Placoidea | MFTLKIVVYTTVTFFVSLFTFGFLSNDASRNPNRKDLE |
| Photosystem II reaction center protein J | J | 39 | Chroomonas Placoidea | MASTGRIPLWLIATVGGTLALTVVGIFFYGSYSGVGSSL |
| Photosystem II reaction center protein K | K | 45 | Chroomonas Placoidea | MEAILLIAKLPEAYAVFKPIIDVAPVIPVFFLLLAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 38 | Chroomonas Placoidea | MSGPNPNKQPVELNRTSLFWGLLLIFVLAVLFSSYFFN |
| PsbM | M | 37 | Chroomonas Placoidea | MNVSVAAYLAVLLGTFVPVVFLVTLYIQSESRKAGSS |
| Psb-gama_linker | N | 297 | Chroomonas Placoidea | TRLVSDWSSDVCSSDLSRMMKSLALAAVGLAVGAEAFAPTPMVGGAKLALRTSSTRSVATVGPKMAMDVNAIVEGAQYLTAAVPNVPFVDEITGEPQGLTAPIVHFGSVISLWLLFALPVWSAAYKAAGADTAEWVGVSQVTEDAPGIGLYGKYAPEYDGPTFREGLEYVLSFAWKPPILIAWKPRADLDRAMMDPARDTVVSSLYKSLGGALDKTAVYDEEDQLLILSDMETFPETELGRRRVAQAEAAGWFTGNPSFGKSLIEYSEETKKGMREPGTVSISAKELAALRAEAAKK |
| ACPII-4 | 0 | 219 | Chroomonas Placoidea | MLRTAILALCVAGASAFTASPALYKSASRKAAVSGMKMQEADRSYAMPFLSRPPALDGSMAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGCLGFLVQEQANLPLPGFDNKLATEAFFSVPAGGLWQIFFSLGAIEIITNKGKLTPGSMFTGGRAPGDLDFDPLNLSVDETALRRFELAELKHARLAMIGLGGMLHQMLLTKQAPIEQLTNFKSLA |
| ACPII-4 | 4 | 219 | Chroomonas Placoidea | MLRTAILALCVAGASAFTASPALYKSASRKAAVSGMKMQEADRSYAMPFLSRPPALDGSMAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGCLGFLVQEQANLPLPGFDNKLATEAFFSVPAGGLWQIFFSLGAIEIITNKGKLTPGSMFTGGRAPGDLDFDPLNLSVDETALRRFELAELKHARLAMIGLGGMLHQMLLTKQAPIEQLTNFKSLA |
| PsbO | O | 300 | Chroomonas Placoidea | NRAAACSVTMQDNSLAKKAAGIAAIPLSFLLGVNAANAITTEDIRGLTYSQVKGTGLANRCPEVSEQNAGGTIKFADDKKYKVTELCLEPKSFQIEEEVTKRRGETKKEFVDTKLMTRATYSLTGIEGPIVFKDGGLTFLEKGGIDYAATTVQLPGGERVPFLFTIKELEGKFSSSQVSAGTELGGNFKTPSYRTGLFLDPKGRGGTTGYDMAVALPGLEADGGEGQDELFAETNKVFQVTDGSIEMAFNRVDGTNGEFSGVFVSEQLSDTDMGSKAPKKVLLKGIVFGKIEEQTGDEDY |
| PsbQ | Q | 144 | Chroomonas Placoidea | AASGDFPKQSYFGAAPISAPFGDTYGTAGAPIWEKLGETEKGIFTRIAQTTKDQLEQASELISLGSWEASRQRLRMTMYETRKSMVRLTDVDGSKDAKDLFATFKKKLEALDRALVAKDKALSIKLIGDVRASYNKWAATVGGV |
| Photosystem II reaction center protein T | T | 32 | Chroomonas Placoidea | METLVYVFLLAGTLGVIFFAVFFRDPPRIAKK |
| PsbU | U | 121 | Chroomonas Placoidea | MQAESVDRRGFLGALGAAVVAAPLAASANVEYPNVPYLGGSDIIDVNNANVRVYTRLPGMYPAIAKKIIKRAPYKDINEMLEKGDFTAAEKDILDKYLPNLTALEPAPEYVIDNINNGLYR |
| Photosystem II cytochrome c550 | V | 163 | Chroomonas Placoidea | MLKRFSSLNIILGMLLVSFVASPVHATDLDENTRTVPLDSSGTTVILTPEQVKRGKRLFNSSCGNCHVGGITKTNPNLGLEPDALSLATPARDNIDALVDYMKNPTTYDGLESIAELHPSVKSADIFPKMRSLSDEDLFAIGGHILLQPKLSSEKWGGGKIYY |
| PsbW | W | 130 | Chroomonas Placoidea | TRSLCDWSSDVCSSDLSKVLFLALCLVAGASAFNAPAPMALRASKTAMTMKAEGPMPKLAKALAPAIAAANIAIASPVFAEGTGEALGIDDTRLIVPVILIPVITFILYAGFASEQDNEDFFDTYDQRRK |
| Photosystem II reaction center protein X | X | 39 | Chroomonas Placoidea | MTPSLSAFINSLLLGLFVVVIPIGAALFLVSQSDRVTRT |
| Photosystem II reaction center protein Psb30 | Y | 34 | Chroomonas Placoidea | MFNPTTLFQLIALFLVITSGPAIIVLIAFRRGNL |
| Photosystem II reaction center protein Z | Z | 62 | Chroomonas Placoidea | MVGLLQILVSILILLSFALVVGVPVILVSPGEWEKSKGLVYSAAGLWFGLVIVIAAFNSFVI |
| ACPII-1 | 1 | 218 | Chroomonas Placoidea | MFRAALLLACLASASAFAPGSLMMPKSATRAAISRGPRMQANDDLAVPFLERPPMLDGSYAGDIGFDPVGFSNYFDLRWLREAELKHGRVCMLGVVGFLVQEFVTLPMFSNGVTPVDDFFVVPATGLWQIFFTIGFVEAFSNGFKLTPSDMFADDRAPGDLGFDPLGCGKDPAALARRQLVEVKNGRLAMIAFGGMLHQQLLTKQGVIEQLTNFKAIM |
| ACPII-1 | 7 | 218 | Chroomonas Placoidea | MFRAALLLACLASASAFAPGSLMMPKSATRAAISRGPRMQANDDLAVPFLERPPMLDGSYAGDIGFDPVGFSNYFDLRWLREAELKHGRVCMLGVVGFLVQEFVTLPMFSNGVTPVDDFFVVPATGLWQIFFTIGFVEAFSNGFKLTPSDMFADDRAPGDLGFDPLGCGKDPAALARRQLVEVKNGRLAMIAFGGMLHQQLLTKQGVIEQLTNFKAIM |
| ACPII-2 | 2 | 200 | Chroomonas Placoidea | APRAVSKTAPRMAVFPGQFSDSVPFLKQPTNLDGSYVGDVGFDPLGFSDVFDIRVLREAELKHGRIAMLATLGMVVQDAYTFPFFDKVLPIPAHDVIVKSGGMSQILLWTSFAEIFGGIALFQTIQGKRAPGDYSFDPLNLSANDLEKRERYALAEIKHSRLAMLAFSGMVHQYFITNQGVIEQINNFRPINGFPDATFS |
| ACPII-2 | 8 | 200 | Chroomonas Placoidea | APRAVSKTAPRMAVFPGQFSDSVPFLKQPTNLDGSYVGDVGFDPLGFSDVFDIRVLREAELKHGRIAMLATLGMVVQDAYTFPFFDKVLPIPAHDVIVKSGGMSQILLWTSFAEIFGGIALFQTIQGKRAPGDYSFDPLNLSANDLEKRERYALAEIKHSRLAMLAFSGMVHQYFITNQGVIEQINNFRPINGFPDATFS |
| ACPII-3 | 3 | 229 | Chroomonas Placoidea | MLRAVVLAACVASAAAFAPGASVLPRAAARATSTKGPSMQLLPLYGEGKLQGPGTQAIPGSEPPPALDGTWVGDVGFDPLGFSRVIDMRWLREAELKHGRVCMLAATGMIVQDIALFPGVTKTFGPAKITALHDVAVKQGSMQQLLVWLGFLEIFGFVAIVQMLQGSGRQPGDFGFDPLNCGANTDTLARRQLVELKNGRLAMIATGGMIHHFFLTGKGPIEFITTLGA |
| ACPII-3 | 9 | 229 | Chroomonas Placoidea | MLRAVVLAACVASAAAFAPGASVLPRAAARATSTKGPSMQLLPLYGEGKLQGPGTQAIPGSEPPPALDGTWVGDVGFDPLGFSRVIDMRWLREAELKHGRVCMLAATGMIVQDIALFPGVTKTFGPAKITALHDVAVKQGSMQQLLVWLGFLEIFGFVAIVQMLQGSGRQPGDFGFDPLNCGANTDTLARRQLVELKNGRLAMIATGGMIHHFFLTGKGPIEFITTLGA |
| ACPII-5 | 5 | 216 | Chroomonas Placoidea | MLRVALIAAILASASAFAPMGSLGLVKSARSGAAISPRMQSGDFSAAVPFLKRPSNLDGTLAGDVGFDPLGFSDVFDLRVLREAELKHGRFAMLAVLGFLVQEVYTFPFFPKMAPVDAHDYFVTQGGGSQIIFWISFVEIFGVVALFELIQGKRDAGDFAFDPLGLGKDEATLARYKVAEIKHARLAMIAIGGFIHQFWVTKQTVLEQLGNFQSLA |
| ACPII-5 | G | 216 | Chroomonas Placoidea | MLRVALIAAILASASAFAPMGSLGLVKSARSGAAISPRMQSGDFSAAVPFLKRPSNLDGTLAGDVGFDPLGFSDVFDLRVLREAELKHGRFAMLAVLGFLVQEVYTFPFFPKMAPVDAHDYFVTQGGGSQIIFWISFVEIFGVVALFELIQGKRDAGDFAFDPLGLGKDEATLARYKVAEIKHARLAMIAIGGFIHQFWVTKQTVLEQLGNFQSLA |
| ACPII-6 | 6 | 234 | Chroomonas Placoidea | MLRLSILAACLAAAQAFTSPAALLRPSTRAAVSRGPSMQLYKDGIIQGLGVEAIPGAGRPANLDGTLVGDVGFDPLGFSNWLDLRWAREAEIKHGRVAMLAATGMIVQDAYKFPGFEGEFGGAAMMKLHNLAVEQGAMQQLLLWLGLLEIISGVPAIIQTLNGSERQPGDFGFDPLNCGANPDTLARRQLTELKNGRLAMIAVGGMVHHYLLVGRGPIEFITNIPNFKNPLPPF |
| ACPII-6 | P | 234 | Chroomonas Placoidea | MLRLSILAACLAAAQAFTSPAALLRPSTRAAVSRGPSMQLYKDGIIQGLGVEAIPGAGRPANLDGTLVGDVGFDPLGFSNWLDLRWAREAEIKHGRVAMLAATGMIVQDAYKFPGFEGEFGGAAMMKLHNLAVEQGAMQQLLLWLGLLEIISGVPAIIQTLNGSERQPGDFGFDPLNCGANPDTLARRQLTELKNGRLAMIAVGGMVHHYLLVGRGPIEFITNIPNFKNPLPPF |
| Photosystem II CP47 reaction center protein | B | 509 | Chroomonas Placoidea | MGLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARIGVTDSWGGWSVTGESVANPGFWSFEGVALAHIGLSGLLFLAAVWHWVYWDLELFRDPRTGNPALDLPKIFGIHLLLSGVLCFGFGAFHVTGAWGPGIWVSDAYGITGKVQPVAPAWGAEGFNPFNPSGVASHHIAAGILGFLAGIFHIAVRPPQRLYRALRMGNIETVLSSSIAAVFWSAFITTGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGLNLSEAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFQDKEGKELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGQVFKDAPTVKKYARKAQLGEVLEFDRTTLESDGVFRSSPRGWYTFGHANFALLFFLGHLWHGSRTLFRDVFSGIGAEVTEQVEFGAFQKLGDRSTKKQGAV |
| PsbC_CP43 | C | 473 | Chroomonas Placoidea | MKTLYSLRRFYHVETPFNSSLSVAGRDIESTGFAWWSGNSRLINVSGKLLGAHVAHAGLMVFWCGAMTLFEVAHYIPEKPLYEQGLILLPHLAVLGWGVGPGGEIIDIYPYFVVGVLHLISSAVLGFGGVYHSLIGPDTLEESFPAFGYDWRDKNKITTILGIHLIVLGIGAFLLVIKAMYVGGIYDTWAPGGGDVRIIDSPTLNPGVIFGYVLKSPWGGDGWIVSVNNMEDLVGGHIWIGIICIVGGFWHIFTKPFAWARRAYVWSGEAYLSYSLVAVSLMGFIASQYSWYNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVSSAQGPTGLGKYLMRSPSGEIILGGETQRFWDLRAPWIEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSPRSWLTCAHFFLGFAFYIGHLWHAGRARAAAAGFEKGINRENEPTLSLRPID |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-01-06 Deposition Author(s): Li, K. , Liu, L.N. , Zhang, Y.Z. , Zhao, L.S.