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FASTA Sequence PDB Format mmCIF Format
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8XIH

Protein-dna complex

PDB DOI: 10.2210/pdb8xih/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Palmaria Palmata , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-12-19
Deposition Author(s): Li, Z.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Literature

Protein-dna complex

Li, Z.

Primary Citation of Related Structures: 8XIH


Proteins
Molecule Chains Sequence Length Organism Sequence
Piwi domain-containing protein A 795 Palmaria Palmata , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MKDHILNLYRIDNLSELDFSYKLIDFDLSFIAGKEELLNKQLQKIAEEVSSVTKGPTAVLKRNQRFFVAVPADKQMEDRSIDGIPFSIPIKLLPEVYRIDSKDIQGHQLDVVYKFLDYEIRRQLGQHRDLWKLNTHQFFLREPMKGIQGSINVFEGFTYKLARLADGHFYVTLDLSTKYIDKYCLSHYINEGNVRTFENNYKGRRFLYLNGDNWYTIELLGFGKSVKEQDFIREGTTYNVLNYITEKIEHSRTDLKRYVKPNDLSMSYTYPGRTMDPHSGATSLARMLYNTKDERVKSLHYLSIKGPSKRFEAINNYISSYFKNLKFNAGKLLISNEPLVEKIKNFWIPELLFNNNRRLKITGFNSGMRDFAYQRKQLIKNNGVLNRTSFDVQYLLVPDEQYMDANLVEGFKNNAEFLIKKLAPAFDKFIIIRYPVKSCTSASVQIQEIEKVLHRRNALHGFALVVLPDLDAFSPAFLKTFHELLKSKFYPDLKVQCASAHNISSFFKPFSTAGNNGIVEYRVVEALKGRFSSYLFYLVLEHLIVNRKWPYALAKNLFYDIYIGIDVHDRHAGFTFFFKNGEQIIFHPEEVPQKTNSQRVEKVRAKTLNKVIYEKLKLYIPLFAPNPNGIVIVRDGRSFGVEYKALQAAINTLAAEGIVNKDTVKYGVVDLHKQSSVPIRIAAKTNSYDQLENPVAGSYKLVSPKEGFIFSTGYPFDIKGTSRPLNLSMKEGDLDFMKVMEDVFCQIMLAFSAPDKSNFLPVIIKLIDTLLEPLTATRETADEAEEDEEEMMDIN
Piwi domain-containing protein B 795 Palmaria Palmata , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MKDHILNLYRIDNLSELDFSYKLIDFDLSFIAGKEELLNKQLQKIAEEVSSVTKGPTAVLKRNQRFFVAVPADKQMEDRSIDGIPFSIPIKLLPEVYRIDSKDIQGHQLDVVYKFLDYEIRRQLGQHRDLWKLNTHQFFLREPMKGIQGSINVFEGFTYKLARLADGHFYVTLDLSTKYIDKYCLSHYINEGNVRTFENNYKGRRFLYLNGDNWYTIELLGFGKSVKEQDFIREGTTYNVLNYITEKIEHSRTDLKRYVKPNDLSMSYTYPGRTMDPHSGATSLARMLYNTKDERVKSLHYLSIKGPSKRFEAINNYISSYFKNLKFNAGKLLISNEPLVEKIKNFWIPELLFNNNRRLKITGFNSGMRDFAYQRKQLIKNNGVLNRTSFDVQYLLVPDEQYMDANLVEGFKNNAEFLIKKLAPAFDKFIIIRYPVKSCTSASVQIQEIEKVLHRRNALHGFALVVLPDLDAFSPAFLKTFHELLKSKFYPDLKVQCASAHNISSFFKPFSTAGNNGIVEYRVVEALKGRFSSYLFYLVLEHLIVNRKWPYALAKNLFYDIYIGIDVHDRHAGFTFFFKNGEQIIFHPEEVPQKTNSQRVEKVRAKTLNKVIYEKLKLYIPLFAPNPNGIVIVRDGRSFGVEYKALQAAINTLAAEGIVNKDTVKYGVVDLHKQSSVPIRIAAKTNSYDQLENPVAGSYKLVSPKEGFIFSTGYPFDIKGTSRPLNLSMKEGDLDFMKVMEDVFCQIMLAFSAPDKSNFLPVIIKLIDTLLEPLTATRETADEAEEDEEEMMDIN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*A)-3') g 8 NA TGAGGTAA
DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*AP*TP*TP*TP*GP*T)-3') h 16 NA TGAGGTAGTAGGTTGT
DNA (5'-D(P*AP*TP*AP*AP*AP*AP*A)-3') e 7 NA ATAAAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-12-19
Deposition Author(s): Li, Z.