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FASTA Sequence PDB Format mmCIF Format
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8XBX

The cryo-em structure of the rad51 l2 loop bound to the linker dna with the blunt end of the nucleosome

PDB DOI: 10.2210/pdb8xbx/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Escherichia Coli , Homo Sapiens , Synthetic Construct

Deposited: 2023-12-07
Deposition Author(s): Hatazawa, S. , Kurumizaka, H. , Ogasawara, M. , Shioi, T. , Takizawa, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.36 Å

8xbx
Literature

The cryo-em structure of the rad51 l2 loop bound to the linker dna with the blunt end of the nucleosome

Hatazawa, S. , Kurumizaka, H. , Ogasawara, M. , Shioi, T. , Takizawa, Y.

Primary Citation of Related Structures: 8XBX


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*GP*CP*CP*AP*CP*CP*AP*CP*G)-3') i 158 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACACCCAAGACACCAGGCACGAGACAGAAAAAAACAACGAAAACGGCCACCACG
DNA (5'-D(P*CP*GP*TP*GP*GP*TP*GP*GP*CP*CP*GP*TP*TP*TP*TP*CP*GP*TP*T)-3') j 158 NA CGTGGTGGCCGTTTTCGTTGTTTTTTTCTGTCTCGTGCCTGGTGTCTTGGGTGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA repair protein RAD51 homolog 1 K 342 Escherichia Coli , Homo Sapiens , Synthetic Construct GSHMAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
DNA repair protein RAD51 homolog 1 L 342 Escherichia Coli , Homo Sapiens , Synthetic Construct GSHMAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
DNA repair protein RAD51 homolog 1 M 342 Escherichia Coli , Homo Sapiens , Synthetic Construct GSHMAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-12-07
Deposition Author(s): Hatazawa, S. , Kurumizaka, H. , Ogasawara, M. , Shioi, T. , Takizawa, Y.