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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8WUU

Spcas9-pegrna-target dna complex (pre-initiation)

PDB DOI: 10.2210/pdb8wuu/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Streptococcus Pyogenes , Streptococcus Pyogenes Serotype M1 , Synthetic Construct

Deposited: 2023-10-21
Deposition Author(s): Hirano, H. , Hoki, M. , Itoh, Y. , Nakagawa, R. , Nureki, O. , Omura, S.N. , Shuto, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

8wuu
Literature

Spcas9-pegrna-target dna complex (pre-initiation)

Hirano, H. , Hoki, M. , Itoh, Y. , Nakagawa, R. , Nureki, O. , Omura, S.N. , Shuto, Y.

Primary Citation of Related Structures: 8WUU


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas9/Csn1 A 1367 Streptococcus Pyogenes , Streptococcus Pyogenes Serotype M1 , Synthetic Construct DKKYSIGLAIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDAIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLSQLGGD

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (51-MER) c 51 NA CTAGTACTCTGCCATCAGAGCAAGCACTACGGCCGATTGCTCTAAGTGATC
DNA (5'-D(*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3') d 17 NA TGATGGCAGAGTACTAG
RNA (137-MER) b 137 NA GGCCGUAGUGCUUGCUCUGAGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCAGGAGGAAGCAGUGCAACCAAACCACAGCGUGCUCAGUCUG
DNA (34-MER) f 34 NA GATCACTTAGAGCAATCGGCCCAGACTGAGCACG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-10-21
Deposition Author(s): Hirano, H. , Hoki, M. , Itoh, Y. , Nakagawa, R. , Nureki, O. , Omura, S.N. , Shuto, Y.