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8WFD

The cryo-em structure of tdpab in complex with amppnp and dna

PDB DOI: 10.2210/pdb8wfd/pdb

Classification: TRANSLOCASE/DNA
Organism(s): Francisella Tularensis Subsp. Tularensis Schu S4 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-09-19
Deposition Author(s): An, T. , Tan, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.67 Å

8wfd
Literature

The cryo-em structure of tdpab in complex with amppnp and dna

An, T. , Tan, Q.

Primary Citation of Related Structures: 8WFD


Proteins
Molecule Chains Sequence Length Organism Sequence
TdpA F 586 Francisella Tularensis Subsp. Tularensis Schu S4 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA A 586 Francisella Tularensis Subsp. Tularensis Schu S4 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA B 586 Francisella Tularensis Subsp. Tularensis Schu S4 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA E 586 Francisella Tularensis Subsp. Tularensis Schu S4 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA D 586 Francisella Tularensis Subsp. Tularensis Schu S4 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpA C 586 Francisella Tularensis Subsp. Tularensis Schu S4 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAESPIGVVVSSRRNGPWAELTLVLTPQELDQGKRLLLGELVRVSSGGKDYVGMVLDGYYEPVGRSDPTYTLALAHINQVDLEKEDPWARKEVNFYHHRIVLLGRVVQGGLFAPSTRLLPPVVEARVYRMTEEELQRLLAAEVRTSGSVKAEGKRRYAFGHLAYGLEEGGEYPEVVKEVDPALFVGRRTANFGKTGFGKSNENKVILTLLAHAFPRVGMLILDQNAEYLLQTEATTSPGLAQAFKALGIRGRIRFYTAREEAWARRLKEHLGTEWREYVEVLPLKVDFYHFPELAVALAYQRRRLQGAEPPQYLENAFYNLEDWKHIPDRMAYVYGALRKAGLTPRKGLKIKYKNENYDISEEKSWGNLQEAMENNSQRGDNKGGARELYSRAKVFSFLRAFHAPGKEANFLETIKEDLLGEKTEGEGKVVILDLPSLGEAADFFTLRLMDLLFDRAVELYGKRQANFLVVLEEAHNFLEDKAGIFYRVAKEGRKYGIGMLYSTQSPASIPMEILSQTENFLVKHLSSEEDVKVLKRAKAPFAFVADFLLSEPIIGYSYVYFEPYQPFVVPLRVKLLEHVLKSLDS
TdpB H 375 Francisella Tularensis Subsp. Tularensis Schu S4 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPYAGEGSNPLGLKDFLDDLRLDHYQDLLRELDELYQKLKQERQVPLHGDGEAYPLLTLTVDGGEGRAFEELPLLSFGLVRVAAVGVKGFRLPSIAHLLPGYEVLRDPKGYLEGLLERSEESPAADALKTFFRATGISLEDLGEYYTKDLRAFMGIFRDVLEWAYLVWGVEKVLQESYKDYLFIKDGRLAQLGVRESFRSKLQNYFARKHLLLAGVTKRSRLLAEGLTSLVMARLFAEARGTFVLQVPQELMEKAYRYERQWNADLEGAFVMGRRYVARLLEDTFRPQEGVAIFDLPPYLGEEDAVKVARSLRAHRSVLYGGSVGTVVEAHGRASVARSIPRRMEEEILARFRKAFGEDLAKKLTEWLRLADRED
TdpB G 375 Francisella Tularensis Subsp. Tularensis Schu S4 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPYAGEGSNPLGLKDFLDDLRLDHYQDLLRELDELYQKLKQERQVPLHGDGEAYPLLTLTVDGGEGRAFEELPLLSFGLVRVAAVGVKGFRLPSIAHLLPGYEVLRDPKGYLEGLLERSEESPAADALKTFFRATGISLEDLGEYYTKDLRAFMGIFRDVLEWAYLVWGVEKVLQESYKDYLFIKDGRLAQLGVRESFRSKLQNYFARKHLLLAGVTKRSRLLAEGLTSLVMARLFAEARGTFVLQVPQELMEKAYRYERQWNADLEGAFVMGRRYVARLLEDTFRPQEGVAIFDLPPYLGEEDAVKVARSLRAHRSVLYGGSVGTVVEAHGRASVARSIPRRMEEEILARFRKAFGEDLAKKLTEWLRLADRED

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*GP*CP*CP*CP*TP*TP*TP*TP*GP*CP*AP*A)-3') i 12 NA GCCCTTTTGCAA
DNA (5'-D(P*TP*TP*GP*CP*AP*AP*AP*AP*GP*GP*GP*C)-3') j 12 NA TTGCAAAAGGGC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-19
Deposition Author(s): An, T. , Tan, Q.