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FASTA Sequence PDB Format mmCIF Format
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8WDA

Cryo-em structure of the substrate-bound dppabcd complex

PDB DOI: 10.2210/pdb8wda/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) , Mycolicibacterium Smegmatis Mc2 155

Deposited: 2023-09-14
Deposition Author(s): Hu, T. , Rao, Z. , Zhang, B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.26 Å

8wda
Literature

Cryo-em structure of the substrate-bound dppabcd complex

Hu, T. , Rao, Z. , Zhang, B.

Primary Citation of Related Structures: 8WDA


Proteins
Molecule Chains Sequence Length Organism Sequence
Probable periplasmic dipeptide-binding lipoprotein DppA A 517 Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) , Mycolicibacterium Smegmatis Mc2 155 CGGGVLSPDVVLVNGGEPPNPLIPTGTNDSNGGRIIDRLFAGLMSYDAVGKPSLEVAQSIESADNVNYRITVKPGWKFTDGSPVTAHSFVDAWNYGALSTNAQLQQHFFSPIEGFDDVAGAPGDKSRTTMSGLRVVNDLEFTVRLKAPTIDFTLRLGHSSFYPLPDSAFRDMAAFGRNPIGNGPYKLADGPAGPAWEHNVRIDLVPNPDYHGNRKPRNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALTVYQRDLGDHATSGPAAINQTLDTPLRLPHFGGEEGRLRRLALSAAINRPQICQQIFAGTRSPARDFTARSLPGFDPNLPGNEVLDYDPQRARRLWAQADAISPWSGRYAIAYNADAGHRDWVDAVANSIKNVLGIDAVAAPQPTFAGFRTQITNRAIDSAFRAGWRGDYPSMIEFLAPLFTAGAGSNDVGYINPEFDAALAAAEAAPTLTESHELVNDAQRILFHDMPVVPLWDYISVVGWSSQVSNVTVTWNGLPDYENIVKA
Probable dipeptide-transport integral membrane protein ABC transporter DppB B 308 Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) , Mycolicibacterium Smegmatis Mc2 155 MGWYVARRVAVMVPVFLGATLLIYGMVFLLPGDPVAALAGDRPLTPAVAAQLRSHYHLDDPFLVQYLRYLGGILHGDLGRAYSGLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLRQGGIFDSAVLVTGLVIIAIPIFVLGFLAQFLFGVQLEIAPVTVGERASVGRLLLPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLSRPRVVTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQAVTRQETPTVVSIVTVLVLIYLITNLLVDLLYAALDPRIRYG
Probable dipeptide-transport integral membrane protein ABC transporter DppC C 287 Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) , Mycolicibacterium Smegmatis Mc2 155 MAEHTGFWLDAWRGLRRRPKFVIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRDALDPASRAWRA
tetrapeptide E 4 Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) , Mycolicibacterium Smegmatis Mc2 155 AVAA
Probable dipeptide-transport ATP-binding protein ABC transporter DppD D 548 Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) , Mycolicibacterium Smegmatis Mc2 155 MSVPAAPLLSVEGLEVTFGTDAPAVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPAGGRITAGRVVFDGRDITGADAKRLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEALRANTDGRAARRRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEPTSALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAAQSILQSPQHEYTRRLVAAAPSLTARSRRPPESRSRATTQAGDILVVSELTKIYRESRGAPWRRVESRAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQPTSGTVVFDGTYDVGALARDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGDRRQRQRAVRELVDQVALPSSILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQILDLLADLQADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQLLQAIPGAPSAPRKVGNL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-14
Deposition Author(s): Hu, T. , Rao, Z. , Zhang, B.