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8WD8

Cryo-em structure of ttdago-guide dna-target dna complex

PDB DOI: 10.2210/pdb8wd8/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Chaetopterus Variopedatus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-09-14
Deposition Author(s): Zhuang, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

8wd8
Literature

Cryo-em structure of ttdago-guide dna-target dna complex

Zhuang, L.

Primary Citation of Related Structures: 8WD8


Proteins
Molecule Chains Sequence Length Organism Sequence
Argonaute family protein A 750 Chaetopterus Variopedatus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MLMKVLTNMVKLNQDIIPNEIYLYKIFNKPEDGMNIYKIAYRNHGIVIDPQNRIIATPSELEYSGKFAIEDEISFNELPENYQNRLVLRILRDNGISDHALSRTLQKYRKPKPFGDFEVIPEIRSSVIKHGGDFYLVLHLSHQIRSKKTLWELVGRNKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRYNGDPDLIEDNSNDVEHWYDYHLERYWNTPELKKEFYKKFGPVDLNQPIILAKPLRQHNRGDLVHLLPQFVVPVYNAEQLNDILASEILEYLKLTSNQRISLLSRLINDIKTNTNIIVSSLTELEANTFDVDLNDMLQVRNADNVKVTLSELEISKTRLFTWMKSRKYPVILPYDIPQKLKKIEKIPVFIIVDSALSRDIQTFAKDEFRYLISSLQKSLSNWVDFPILDIRDKYIFTIDLTSDKDIVNLSIKLVNLMKNAELGLALIATRTKLPNETFDEVKKRLFSVNIISQVVNEATLYKRDKYNESRLNLYVQHNLLFQILSKLGIKYYVLRHKFSYDYIVGIDVTPMKLSHGYIGGSAVMFDSQGYIRKIIPVEIGEQMGESIDMKEFFKDMVVQFGKFGIDLEGKSILILRDGKITKDEEEGLAYISKVFGIKITTFNIVKRHLLRIFANRKLYLRLANSVYLLPHRIKQSVGTPVPLKLSEKRLILDGTITSQEITYNDIFEILLLSELNYGSISADMKLPAPVHYAHKFVRALRKGWRIREELLAEGFLYFV
Argonaute family protein B 750 Chaetopterus Variopedatus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MLMKVLTNMVKLNQDIIPNEIYLYKIFNKPEDGMNIYKIAYRNHGIVIDPQNRIIATPSELEYSGKFAIEDEISFNELPENYQNRLVLRILRDNGISDHALSRTLQKYRKPKPFGDFEVIPEIRSSVIKHGGDFYLVLHLSHQIRSKKTLWELVGRNKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRYNGDPDLIEDNSNDVEHWYDYHLERYWNTPELKKEFYKKFGPVDLNQPIILAKPLRQHNRGDLVHLLPQFVVPVYNAEQLNDILASEILEYLKLTSNQRISLLSRLINDIKTNTNIIVSSLTELEANTFDVDLNDMLQVRNADNVKVTLSELEISKTRLFTWMKSRKYPVILPYDIPQKLKKIEKIPVFIIVDSALSRDIQTFAKDEFRYLISSLQKSLSNWVDFPILDIRDKYIFTIDLTSDKDIVNLSIKLVNLMKNAELGLALIATRTKLPNETFDEVKKRLFSVNIISQVVNEATLYKRDKYNESRLNLYVQHNLLFQILSKLGIKYYVLRHKFSYDYIVGIDVTPMKLSHGYIGGSAVMFDSQGYIRKIIPVEIGEQMGESIDMKEFFKDMVVQFGKFGIDLEGKSILILRDGKITKDEEEGLAYISKVFGIKITTFNIVKRHLLRIFANRKLYLRLANSVYLLPHRIKQSVGTPVPLKLSEKRLILDGTITSQEITYNDIFEILLLSELNYGSISADMKLPAPVHYAHKFVRALRKGWRIREELLAEGFLYFV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Target DNA t 17 NA ACAACCTACTACCTCCT
Target DNA u 17 NA ACAACCTACTACCTCCT
Guide DNA g 16 NA GGAGGTAGTAGGTTGT
Guide DNA h 16 NA GGAGGTAGTAGGTTGT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-14
Deposition Author(s): Zhuang, L.